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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGAATGCACATTTATGTCCGCCGAGGTGGTCCAAATTACCAATCTGGACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatctagttgcctgtaagcatttttttggggtgatggaaaccctttagctcagaaaatagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacatatagatgagctgattgtgttttgaaaaaaaatccaccgcag

Basic information

species Zea mays
transcript GRMZM2G107082_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 5'ss of exon 10
TTCAAGAATGCACATTTATGTCCGCCGAGGTGGTCCAAATTACCAATCTGGACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatctagttgcctgta---agcatttttttggggtgatggaaaccctttagctcagaaa---atagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacatatagatgagctgattgtgttttgaaaaaaaatccaccgcag
| |||| |||||||| |||||||| || |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||||  |   ||     | | | | |  | |     | |||  |||  || |||    ||| |||  ||       |   | | || |||||||||  ||    |||||   ||   |     |  |     | |  ||||||||||||    |||||| ||     ||| ||||
TGCAAGGATGCACATCTATGTCCGACGTGGTGGTCCAAATTACCAAACTGGGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatctagtgtctcctactgcacctctctctttgctatgcaagacctgttatgtctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatcctgaccatccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcag

upper sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 5'ss of exon 10
TTCAAGAATGCACATTTATGTCCGCCGAGGTGGTCCAAATTACCAATCTGGACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatcta--gttgcctg-taagcatttttttggggtgatggaaaccctttagctcagaaa---atagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacat---atagatgagctgattgtgttttgaaaaaaaatccaccgcag
| |||| |||||||| |||||||| || |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||  ||  |||  |   | | | | |  | |     | |||  |||  || |||    ||| |||  ||       |   | | || |||||||||  ||    |||||   ||  | |  ||   | |||||    |  ||||||||||||    |||||| ||     ||| ||||
TGCAAGGATGCACATCTATGTCCGACGTGGTGGTCCAAATTACCAAACTGGGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatctactgtctcctactgcacctctctctttgctatgcaagacctgttatatctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatc--ctgaccatcccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357576|gb|DN224549.1|DN224549
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|4966766|gb|AI691622.1|AI691622
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|40335268|gb|CK369338.1|CK369338
EST:     GACTGGCTAAAATGCATAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAATCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|89248869|gb|DY620655.1|DY620655
EST:     GACTGGTTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATTTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60352571|gb|DN219544.1|DN219544
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|71769086|gb|DR967023.1|DR967023
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60354935|gb|DN221908.1|DN221908
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|12969143|gb|BG266088.1|BG266088
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCG
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCG
EST: gi|148953531|gb|EE153040.2|EE153040
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60398717|gb|DN231533.1|DN231533
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|3191853|gb|AI001299.1|AI001299
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|113703225|gb|EE680729.1|EE680729
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|32851220|gb|CD990901.1|CD990901
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|13177931|gb|BG349114.1|BG349114
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|5922366|gb|AW055655.1|AW055655
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|37382552|gb|CF628229.1|CF628229
EST:     GATTGGCTAAAATGTGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|4827542|gb|AI668234.1|AI668234
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182331|gb|FL049128.1|FL049128
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182330|gb|FL049127.1|FL049127
EST:     GACTGGCTAAAATGCGTAAS-TTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|5871775|gb|AW018246.1|AW018246
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182334|gb|FL049131.1|FL049131
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|67017038|gb|CO445787.1|CO445787
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60401566|gb|DN234373.1|DN234373
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|78024963|gb|DV493350.1|DV493350
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|50332311|gb|CO527437.1|CO527437
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|16378083|gb|BI992269.1|BI992269
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182332|gb|FL049129.1|FL049129
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60395413|gb|DN228283.1|DN228283
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211420152|gb|FL463211.1|FL463211
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211481515|gb|FL480068.1|FL480068
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|113703355|gb|EE680859.1|EE680859
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182329|gb|FL049126.1|FL049126
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182333|gb|FL049130.1|FL049130
EST:     GACTGGCTAAAATGCGTAAS-TTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA