Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGGACCAGATGGCGGATGCAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgatggatcttgactagttcatacacacttgcccttaactgcattcttaccaccttggtttttatatccaattcatcccatcacatccttcatgcgcag

Basic information

species Zea mays
transcript GRMZM2G105772_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105772_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os09g24200.1 (Oryza sativa), 5'ss of exon 10
---GATGCTGGACCAGATGGCGGATGCAG---CTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgatggatcttgactagttc-atacac-acttgcccttaactgcattcttaccaccttggtttttatatccaatt--catcccatcacatccttcatgcgcag--
     |||| |||||| |  | || |||    |  ||||||| ||||| |||||||||||||| ||||| |||||||||||  |||||   |||  || |    | || | |  |||     | |      | |||  |  || | ||| | |   || |  |||  ||||   || ||||    |    
GAATTTGCTAGACCAGTTTCCAGAGGCAATGCCACAGACCATAGCAGTTACTCCAGAGGAGAATGAAGCCATACTTCGTgtgagtcgaaaaatcccgaattcccctatgctctgcttagttgtcatcttgcttttagaatatttgcttt-acacataactagcataacatcctttctttcacatcctaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5081049|gb|AI738311.1|AI738311
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|211085892|gb|FL199467.1|FL199467
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|6022682|gb|AW067610.1|AW067610
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|31364335|gb|CD448690.1|CD448690
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAGGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|211120609|gb|FL462996.1|FL462996
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|12969428|gb|BG266372.1|BG266372
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|91876142|gb|EB406099.1|EB406099
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTTTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|5081050|gb|AI738312.1|AI738312
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32919195|gb|CF024007.1|CF024007
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|148943102|gb|EC888158.2|EC888158
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAAGGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTTTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|148951141|gb|EC896815.2|EC896815
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|9732268|gb|BE511020.1|BE511020
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|78023202|gb|DV491589.1|DV491589
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|33102722|gb|CF062682.1|CF062682
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|76011554|gb|DT938724.1|DT938724
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32866688|gb|CF006370.1|CF006370
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|149099558|gb|EE185596.2|EE185596
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32850349|gb|CD990030.1|CD990030
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|21891397|gb|BQ744610.1|BQ744610
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32867785|gb|CF007467.1|CF007467
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|78023686|gb|DV492073.1|DV492073
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|18167746|gb|BM337586.1|BM337586
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|5739612|gb|AI947407.1|AI947407
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|33103270|gb|CF063230.1|CF063230
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|91878896|gb|EB408853.1|EB408853
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAAGGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|33094018|gb|CF054012.1|CF054012
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGC                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32867786|gb|CF007468.1|CF007468
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|33093100|gb|CF053094.1|CF053094
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|6431781|gb|AW171985.1|AW171985
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32866689|gb|CF006371.1|CF006371
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|31363913|gb|CD448268.1|CD448268
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAGGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|6654120|gb|AW267525.1|AW267525
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32849328|gb|CD989009.1|CD989009
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGNAGAACCAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|91054259|gb|EB164677.1|EB164677
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: gi|32945337|gb|CF050156.1|CF050156
EST:     CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT                         CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 140

GATGCTGGACCAGATGGCGGATGCAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGTGCAACAAGAATGAGCAGCTGACCGCCAACTACCTCTTGGATCACATGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 112

GATGCTGGACCAGATGGCGGATGCAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGTGCAACAAGAATGAGCAGCTGACCGCCAACTACCTCTTGGATCACATGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 117

GATGCTGGACCAGATGGCGGATGCAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGTGCAACAAGAATGAGCAGCTGACCGCCAACTACCTCTTGGATCACATGC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 73

GATGCTGGACCAGATGGCGGATGCAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGTGCAACAAGAATGAGCAGCTGACCGCCAACTACCTCTTGGATCACATGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGCTGGACCAGATGGCGGATGCAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgatggatcttgactagttcatacacacttgcccttaactgcattcttaccaccttggtttttatatccaattcatcccatcacatccttcatgcgcag

- - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA