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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTACTGCTGCTGGTTCCGTAACTTGTCAAACAAACGTTCTTAACGCAGACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAGgtcagcatgaaggattattcgcttctttttgcggtacatttattacatttcagtaagggcttgttcgttttggtgataatccacatggattgggtgggat...

Basic information

species Zea mays
transcript GRMZM2G104449_T02
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93284537|gb|EB676801.1|EB676801
EST:     CAAGACTCCAG                         AGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
genomic: CAAGACTCCAGgtcagcatga ... cttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
EST: gi|211228762|gb|FL445456.1|FL445456
EST:     GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAG                         AGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
genomic: GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAGgtcagcatga ... cttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
EST: gi|149084045|gb|EE173441.2|EE173441
EST:     GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAG                         AGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
genomic: GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAGgtcagcatga ... cttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA