1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACAAAAGCTGAGCCACCTATTTATTACATGCCAACTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcatagtgtcctactcaagaattttataacttgtgcatacacatgttcttgctcctgttctatgaacgttgtttgtgggtgaatcaaacttgtgagaaacactacag
species | Zea mays |
transcript | GRMZM2G102475_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|87156896|gb|DY401685.1|DY401685
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|149045934|gb|EE047932.2|EE047932
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAEST: gi|60349148|gb|DN216121.1|DN216121
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: TGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAEST: gi|67013106|gb|CO441855.1|CO441855
genomic: TGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|60357834|gb|DN224807.1|DN224807
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|22133799|gb|BQ833909.1|BQ833909
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|26558420|gb|CA830655.1|CA830655
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|60356392|gb|DN223365.1|DN223365
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAEST: gi|31349518|gb|CD433875.1|CD433875
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|60349348|gb|DN216321.1|DN216321
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAA
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAAAGCTGAGCCACCTATTTATTACATGCCAACTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcatagtgtcctactcaagaattttataacttgtgcatacacatgttcttgctcctgttctatgaacgttgtttgtgggtgaatcaaacttgtgagaaacactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA