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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggttggatatatgctgtttaagcattgtattattggagtatatattttattcagtttctcgtatgcatcttttttcttgggcag

Basic information

species Zea mays
transcript GRMZM2G102196_T02
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61119836|gb|DN560797.1|DN560797
EST:     GCACAAGCAGTTCTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG                         GAAGTTCTTAGCCCATCAATTGAGCGGATACGCACATACGTGGATAATTTG
genomic: GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggtt ... tcttgggcagGAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
EST: gi|60354570|gb|DN221543.1|DN221543
EST:     GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG                         GAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
genomic: GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggtt ... tcttgggcagGAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
EST: gi|4621437|gb|AI612270.1|AI612270
EST:     GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG                         GAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
genomic: GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggtt ... tcttgggcagGAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
EST: gi|60339229|gb|DN206202.1|DN206202
EST:     GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG                         GAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
genomic: GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggtt ... tcttgggcagGAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
EST: gi|31352028|gb|CD436385.1|CD436385
EST:     TTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG                         GAAGTTCTTAGCCCATTACTTGAGCGGATACACACATACGTGGATAATTTG
genomic: TTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggtt ... tcttgggcagGAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
EST: gi|60340698|gb|DN207671.1|DN207671
EST:     GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG                         GAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
genomic: GCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggtt ... tcttgggcagGAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
EST: gi|60337011|gb|DN203984.1|DN203984
EST:     CACAAGCATGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG                         GAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG
genomic: CACAAGCA-GTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggtt ... tcttgggcagGAAGTTCTTAGCCCGTCAATTGAGCGGATACGCACATACGTGGATAATTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAGgttgttggttggatatatgctgtttaagcattgtattattggagtatatattttattcagtttctcgtatgcatcttttttcttgggcag

- - - - - - - - - - - - - - -  CTGAAG