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AAGAGGAAAGAAATCCAAGCAGGACAGGCTAACTGTCAAATTTCTGAAGAAATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaaccttttccaatcctggatacagtcatacagagcaatacaaagttgtggaggtattagtgtttatggaagagctacaggtctgagatccatgcagaa...
species | Zea mays |
transcript | GRMZM2G100639_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCEST: gi|32933016|gb|CF037828.1|CF037828
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGC
EST: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCAEST: gi|5895653|gb|AW036899.1|AW036899
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCA
EST: AATATATTCATTATGCAAAGAACCTTATTCAACCAAGGCTCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCAEST: gi|32934580|gb|CF039392.1|CF039392
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCA
EST: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCAEST: gi|32945489|gb|CF050308.1|CF050308
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCA
EST: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCAEST: gi|60341724|gb|DN208697.1|DN208697
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCA
EST: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCAEST: gi|20803427|gb|BQ294477.1|BQ294477
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCA
EST: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCAEST: gi|32930876|gb|CF035688.1|CF035688
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCA
EST: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCCCACTGATGAG GCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGCAGTGCA
genomic: AATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaacctttt ... tctgctgcagGCATCTGATCATATTGCAACCTCATATGCTGAGCTCAGGGATGGTAGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGGAAAGAAATCCAAGCAGGACAGGCTAACTGTCAAATTTCTGAAGAAATATATTCATTATGCGAAGAACCTTATTCAACCAAGGCTCACTGATGAGgtaaccttttccaatcctggatacagtcatacagagcaatacaaagttgtggaggtattagtgtttatggaagagctacaggtctgagatccatgcagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatacaaa