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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttgtccctagcaagtgacattaagttgcatcagttagtttttcagaattctgtacaactttttttaaacgaattctaaaattaccatgattgcag

Basic information

species Zea mays
transcript GRMZM2G100484_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100484_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 5'ss of exon 11
TGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttgtccctagcaagtgacattaagttgcatcagttagtttttcagaattctgtacaactttttttaaacgaattctaaaattaccatgattgcag
|||||| |||||||| || |||||||| |||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| || |||| ||||| |||||||||    |||   | ||       ||   ||||  || |||||   ||  | |  |    | |                       
TGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGATACAGATTTCTGCAGGATTCATGATCTTCTTCTCCATGCTAGgtagcatttctccctagcattcaacacacatttttgctgttt---ttttgggagttctg---aatctgtcatggttgtag----------------------

upper sequence: GRMZM2G100484_T01 (Zea mays), 5'ss of exon 11
lower sequence: PP1S177_79V6.1 (Physcomitrella patens), 5'ss of exon 9
--------TGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttgtccctagcaagtgacattaagttgcatca-gttagtt-----tttcagaattctgta-caactttttt------taaacgaattctaaaattaccatgattgcag-------------------------------
         ||||||||||| ||| | || |  ||  | || || ||||||||||||    | || ||||| ||||||||| |||||||||||||| ||||||   ||   | ||  | | ||| | |  |   ||||| |||  ||     ||  | |||   | |  ||||  ||        | ||||| |   |||||| | || |  ||                                
GTAGCGCCAGAGAACGTTGGGCTCGTGGGCTTGACTCGAGTGGGAAGCAGAAGAGTGGCCGAGATCTCTGCAGGTTTCATGCTCTTCTTCTCCATTTTTGgtacgtttcaccact--ccattgatactctgaaccatcaagtttcttgcgagttggaaaatatggcagtaactcgttggttacgcatacgaagtaagaaattatcgtgttgacacttcatccatttggttcttctcttggttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50334185|gb|CO529311.1|CO529311
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATCTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
EST: gi|22545627|gb|BU097986.1|BU097986
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
EST: gi|26457048|gb|CA828631.1|CA828631
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
EST: gi|211271038|gb|FL034395.1|FL034395
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA