1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCAGAAATGATGACACTTTCACGGGCCACACCGTTCGATTGTGGCAGTGGCGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaattactttttcatcgaaataagccggtcgaagttatcgaaatggcggtgtcttgttgaagttattcagatggcaatgtaacatccctcatctagttttgctttatccatgcttggcag
species | Zea mays |
transcript | GRMZM2G099452_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAEST: gi|149089750|gb|EE179023.2|EE179023
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAEST: gi|149033083|gb|EE154985.2|EE154985
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAEST: gi|22491341|gb|BU051264.1|BU051264
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: TGTTCTAGACGCAA GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAEST: gi|149033082|gb|EE154984.2|EE154984
genomic: TGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: CCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAEST: gi|67029958|gb|CO458707.1|CO458707
genomic: CCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGAAATGATGACACTTTCACGGGCCACACCGTTCGATTGTGGCAGTGGCGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaattactttttcatcgaaataagccggtcgaagttatcgaaatggcggtgtcttgttgaagttattcagatggcaatgtaacatccctcatctagttttgctttatccatgcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT