Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAGTTGTGAACAGACTCACTACTGCCGTTGACCTTCCAACAGAATTTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctttgtttgattcatttttattgaagtttttttcaaagcctctcatctgggtatagctgtagcatctgttcatgcatgaatgcacgtccatgc...

Basic information

species Zea mays
transcript GRMZM2G098815_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098815_T04 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g09610.1 (Oryza sativa), 5'ss of exon 9
TATGGAAGTTGTGAACAGACTCACTACTGCCGTTGACCTTCCAACAGAATTTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctttgtttgattcatttttattgaagtttttttcaaagcctctcatctgggtatagctgtagcatctgttcatgcatg--aatgcacgtccatgc
|||||||||||| ||||| || |||||||| || || || || ||||| |||||||||||||||||| | ||||| |||||||||||||| ||| | ||||| ||||  || |||   || ||   ||| || ||| ||  | |   | | | | |||||  |  ||    |   ||  | || |   |||      ||   
TATGGAAGTTGTAAACAGGCTTACTACTGCTGTAGAACTCCCGACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGgtctgtttgttattttgctcgttcaaattaaa-tttgttggagaatttgttagcagggtactgtagttttgtggcttacttcaagctgatggttaaacaaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94474580|gb|EB703538.1|EB703538
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGAGTAGTTTGTGNNNNNNNGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|5740633|gb|AI948323.1|AI948323
EST:     TTGTCCATGAGTACATCGCAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|211480513|gb|FL444430.1|FL444430
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|60342225|gb|DN209198.1|DN209198
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|149005335|gb|EE039886.2|EE039886
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|71433708|gb|DR814758.1|DR814758
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|71759264|gb|DR957201.1|DR957201
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|76014272|gb|DT941442.1|DT941442
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|110944532|gb|EE164689.1|EE164689
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|84969904|gb|DW468307.1|DW468307
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|149082608|gb|EE171807.2|EE171807
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|78117670|gb|DV536057.1|DV536057
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGNNNNNNNGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|148952744|gb|EC898725.2|EC898725
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|86472031|gb|DY238401.1|DY238401
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|60336775|gb|DN203748.1|DN203748
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: gi|78022525|gb|DV490912.1|DV490912
EST:     TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG                         GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG