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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgctttacagatttgttttacttgactgcttcctttaaagcttctgttgctttcggctatgcggatttgcaaagcaatttgctgccaattttattat...

Basic information

species Zea mays
transcript GRMZM2G097605_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 5'ss of exon 10
GCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgctttacag-atttgttttactt-gactgcttcctttaaagcttctgttgctttcggctatgcggatttgcaaagcaatttgctgccaattttattat-
 |||||||||||||| ||  |||||||||||||||| || || || |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |  | |  |||| |||| ||| ||||| | | | |  || ||   ||||||   |   ||   | ||| ||  || ||      ||| |||||    
CCATGATAAACGGTCTAAACTGCCTGGGTGGATACTGTCACACTTACATGATGCGCACCTAAATCTGAGCACTGATATGGCTTTGCATATAGCTCGTGAGgtatgttccataacatttatttttctttgactggtgc-tatgtagtttgaattgcttcaagtactgta-acttgtaat-catttaaagagcaagtttatctct

upper sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 11
GCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgctttacagatttgttttacttgactgcttcctttaaagcttctgttgctttcggctatgcggatttgcaaagcaatttgctgccaattttattat--------
 ||||| ||||| || || |||||| | |||||||| || || || |||||||| ||||| ||  ||||||| || |||||| | |||||||| ||||||||||||  |     |||| |||| ||  |   || ||||  | | ||| || || | |  |||       | || |  ||||      | |||||||  |        
CCATGACAAACGTTCAAAATTGCCTAGTTGGATACTATCTCACTTACATGATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGgtatgccct-----tttgctttattttgc-attttctttttatcctctttttctgttgtttatttc--ccttcagataaattatgcttctattttatcttaagcagta

upper sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 11
GCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgctttacagatttgttttacttgactgcttcctttaaagcttctgttgctttcggctatgcggatttgcaaagcaatttgctgccaattttattat--
 |||||||| ||||||||  | ||||| |||||||| |||||| ||| |||||| ||| | ||||| ||||||||||||||| | || || ||||| ||||||  | | | |  |   |  |  || |   ||  |  | || |             |||     | ||   |||      | | |     |||| ||    
TCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATTGCTCGAGAGgtaaacct-ataactcgctgcttttttataactcacagtgaaacaaacaaca----aggcataaagaatcaacaattttcctggtttttgttttttttgcag

upper sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 11
GCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgctttacagatttgttttacttgactgcttcctttaaagcttctgttgctttcggctatgcggatttgcaaagcaatttgctgccaattttattat---
 ||||||||||| || || |||||||||||||| || || ||||| | |||||| ||||| ||| |||||||||| |||||| | ||||| || || ||||||||  |   |       |  ||     || |    || |  | |  |      |  | ||  | |     |     | | || |  ||||   |  ||   
TCATGATAAACGCTCTAAATTGCCTGGGTGGATTCTGTCACATTTACGTGATGCACACCTGAATTTGAGCACTGACATGGCTTTGCATATTGCACGAGAGgtatgtctcttattgcgtgtccacaatcttgatattattga--ccttggaaaacatgagataatctgtcagacttgaaagtatggt-tcaataggagcatgtc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093450|gb|CF053444.1|CF053444
EST:     ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAG                         TTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
genomic: ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgcttta ... tctgcaacagTTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
EST: gi|86467670|gb|DY234040.1|DY234040
EST:     ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAG                         TTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
genomic: ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgcttta ... tctgcaacagTTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
EST: gi|211462979|gb|FL459139.1|FL459139
EST:     ATGCGCACCTAAATYTGAGCACTGATATGGCTCTCCATATAGCTCGTGAG                         TTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
genomic: ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgcttta ... tctgcaacagTTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
EST: gi|37383190|gb|CF628585.1|CF628585
EST:     ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAG                         TTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
genomic: ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgcttta ... tctgcaacagTTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
EST: gi|61118799|gb|DN559760.1|DN559760
EST:     ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAG                         TTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG
genomic: ATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgcttta ... tctgcaacagTTTCTCCGGAGGATGGCACAGCCATATGACAAGGCGGGAAGCGGTGGCAAG