Sequence
atgc intronic sequence ATGC exonic sequenceGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctgtacaatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 12
GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctg--tacaatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
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AGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgtttgtgtctgactacaaacgttttgaataaaaat-gaagaaactattacttctcagtgac---aat-----ctgattattctatgcag-----------------------------
upper sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 11
GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctgtac-aatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
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AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaaattgtacat-----ttgtcccttctgtattttct--gtgtttttaatcctttcagattttaaatacttgcttggttgaag------------------
upper sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 10
GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctgtacaatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
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AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaatt-tatac---atttgtcccttttgtattttct--atgcttttaatg--tgtttttaatcctttccaatttta--aatacttgcttggttcttgaag
upper sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT5G08660.1 (Arabidopsis thaliana), 5'ss of exon 12
GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctgtacaatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaa-atggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
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AGCGCATCATGGTTTTGGCTGGGTTGGAGAGTGGGCAAATACAGGgtgagtga-tgaatgaa-attagacctgcaactt--ctacattttgtctttttatttctccaatgctttcgtttttaatcttacag-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211428447|gb|FL143038.1|FL143038EST: GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG ATCTGAATTAAACTGCAAGATATCAGGGCAGATGGACATGTCCCGAATGGA
genomic: GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatct ... tctaatgcagATCTGAATTAAACTGCAAGATATCAGGGCAGATGGACATGTCCCGAATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctgtacaatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
- - - - - - - - - - - TTGGAG
- - - - - - - - - - - - TGGAGA