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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTCTCTACAGGAGGGTGCAAGCTTACATTCAACTTGCTGACCTAGAGCTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtctaggaaatggattctgcaaggcgggcagtactcttattacgtatcacgctgataattttggaaacaatcccag

Basic information

species Zea mays
transcript GRMZM2G096585_T05
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096585_T04 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os08g41390.1 (Oryza sativa), 5'ss of exon 11
AGGCTCTCTACAGGAGGGTGCAAGCTTACATTCAACTTGCTGACCTAGAGCTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtctaggaaatg-gattctgcaaggcgggcagtactcttattacgtatcacgctgataattttggaaacaatcccag----------------
||||| | ||||||||||  ||||||||||| |||||||||||||||||| |||||||||  ||||| || |||||||| ||||| |||||||| |||||| | ||| | | | ||| |  ||  |||||  |||| ||||  | |||    |||| |     |||||| ||   |||                    
AGGCTTTATACAGGAGGGCCCAAGCTTACATGCAACTTGCTGACCTAGAGTTAGCAGAGGTGGATATTAAGAAGGCACTTGAAATTGATCCTGATAACAGgca-agttttgtatatgcgtctccccaagggaggca-tactagttttagtagtcactcc----attttgaaactgatcttgtcactgcttatcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5670934|gb|AI932197.1|AI932197
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|5650182|gb|AI920542.1|AI920542
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAN
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|5608208|gb|AI901875.1|AI901875
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|4826215|gb|AI667843.1|AI667843
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|60351882|gb|DN218855.1|DN218855
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|37376205|gb|CF624609.1|CF624609
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|113658312|gb|DW814887.1|DW814887
EST:     CGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|32936492|gb|CF041311.1|CF041311
EST:     GAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACGG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: GAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|5688792|gb|AI941807.1|AI941807
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|5670926|gb|AI932189.1|AI932189
EST:     CTAGCAGAGGCCGATATCAAAAAGGCNCTGGAAATCGATCCTGACANCAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAN
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|32936333|gb|CF041145.1|CF041145
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|22473281|gb|BU037761.1|BU037761
EST:     CTAGCAGAGGCCGATATCAAAAAGGCCCTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|37384658|gb|CF629420.1|CF629420
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACT-GAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|33092662|gb|CF052656.1|CF052656
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCATGTTTTAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|5525796|gb|AI861689.1|AI861689
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTG-CAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|67012006|gb|CO440755.1|CO440755
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: gi|166535356|gb|EG144318.1|EG144318
EST:     CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG                         GGATGTCAAGT
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGT