Sequence
atgc intronic sequence ATGC exonic sequenceACTGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcgatattatgtatattctcttttgtcgacctatgaccttctgttttatactttagtgatggcatcaactatgttttacatttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G096389_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
ACTGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcgatattatgtatattctcttttgt-cgacctatgaccttctgttttatactttagtgatggcatcaactatgttttacatttgtag
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ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagtt---atgct----aaagttttccatctttttattgattttattattgcttgtagggtattttctataacctata---tagggcctcatagtt-gttgaagataat---------------------
upper sequence: GRMZM2G096389_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 10
ACTGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcgatattatgtatattctcttttgtcgacctatgaccttctgttttatactttagtgatggcatcaactatgttttacatttgtag
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ACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttgcatcttttgattgattttatta-ttgcttgta-gtgtattttctataacctatacagggcctcataattg-----ttgaagataat------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211371508|gb|FL288118.1|FL288118EST: TATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT GTCTCTGTTGTGCATGTGTGTGAGGCCACTCTAACGAAGCGATTGATAGAG
genomic: TATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccag ... acatttgtagGTCTCTGTTGTGCATGTGTGTGAGGCCACTCTAACGAAGCGATTGATAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcgatattatgtatattctcttttgtcgacctatgaccttctgttttatactttagtgatggcatcaactatgttttacatttgtag
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT