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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAAGCCAGTATGTAAAATCTGTCTGGCCATCTAAGAAGAAAGAAAAGTATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgcaacagtttgccattaattcttgggttctcttgctcagtatagactggttgctgagtttttaaatatgacaactgttttccattgtagagaa...

Basic information

species Zea mays
transcript GRMZM2G095969_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 5'ss of exon 10
CTGGAAGCCAGTATGTAAAATCTGTCTGGCCATCTAAGAAGAAAGAAAAGTATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgcaacagtttgccattaattcttg-ggttctcttgctcagta-----tagactggt-tgctgagtttttaaatatgacaactgttttccattgtagagaa
|||||| | |||  || || |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || ||||| |||||| |    ||| ||   ||| || |||        | ||| ||||||     | ||||||  |||   |  |  | |  ||| |  | || |    | |      
CTGGAATCAAGTTCGTGAAGTCTGTCTGGCCATCCAAGAAGAAAGAAAAGTACGAGCCGGATTCTACAGTAAAAGGTCGCAATGAGCCCTGCTTAGTCAGgtaattcaacacaattatgcataaactctaataaggttattgttcagtaagtatttgactggcctgcaatgcatgaacacctga-agttattatttgcttt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340099|gb|DN207072.1|DN207072
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
EST: gi|101392457|gb|EB818158.1|EB818158
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCCTGGTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAG-AATTTCTGACAT
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACAT
EST: gi|78179334|gb|DV549707.1|DV549707
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
EST: gi|149089637|gb|EE178891.2|EE178891
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
EST: gi|76021691|gb|DT948861.1|DT948861
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
EST: gi|7009462|gb|AW455727.1|AW455727
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGNTTAGTTAG                         GCAAGCTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
EST: gi|60341449|gb|DN208422.1|DN208422
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
EST: gi|78074889|gb|DV503323.1|DV503323
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
EST: gi|211280306|gb|FL480836.1|FL480836
EST:     TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAG                         GCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG
genomic: TATGAGCCAGATTCAACAGTAAAAGGTCGCAATGAGCCTTGTTTAGTTAGgtaagttgca ... tcggtttcagGCAAGTTCTTGAGGTAGTGGCTGGAAGCAAAGGAATTTCTGACATAGAAGG