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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACCTATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATTAAGACAGTCGGTGCAGGCTTTGAGgtatgtcggtctatttcagcataaaattaaataatttagcaagcacttaacagcttgcattttgcaaatcag

Basic information

species Zea mays
transcript GRMZM2G095348_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 10
AGTACCTATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATTAAGACAGTCGGTGCAGGCTTTGAGgtatgtcggtctatttcagcataaaattaaataatttagca-agcacttaacagcttgc--------attttgcaaatcag
||||||| | ||||| ||||||||| |||| |||||||||||||| |||||||| || ||||| ||||| || || || || || |||||||||||||||||  || || || |||    | | |||  |  |||  | || || |  | |   | |||         ||||   | ||||
AGTACCTGTGGCAAGCATGGATACCAGTGGAAAAATCATTTGGGCAAAACATAACGAGATACAGACTGTGAACATCAAAACTGTTGGTGCAGGCTTTGAGgtcagttggcctgtttgcaaacagaatcgatcaatcaaacagagaagctgatctcatgccctactatgttttcttattcag

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 10
AGTACCTATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATTAAGACAGTCGGTGCAGGCTTTGAGgtatgtcggtctatttcagca---taaaattaaataatttagcaagcact--taacagcttgcattttgcaaatcag--------------------
|| |||| |||| || ||||||| | |||||||||| |||||||| || ||||||||||| |||||||| ||||| | ||  || || ||||   | ||||||||  ||   ||||   |    |         |||| | | |||||    |   | ||||| ||| |  |  ||                     
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGgtatg--ggctcatttttaccctttttgtccgtgtaatat-gtaagcaaaagtggaaacttgc-tttagtgacacatgcaagtattatgttttttag

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 10
AGTACCTATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATTAAGACAGTCGGTGCAGGCTTTGAGgtatgtcggtctatttcagcataaaattaaataattta---gcaagcact--taacagcttgcattttgcaaatcag--------------------
|| |||| |||| || ||||||| | |||||||||| |||||||| || ||||||||||| |||||||| ||||| |  |  || || ||||   | ||||||||  ||   ||||   | |    |||      | |   | |||||    |   | ||||| ||| |  |  ||                     
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGAAGTGTAGGAGCAGATGTGGAGgtatg--ggctcatttttacctttttttatccgtctaatatgtaagcaaaagtggaaacttgc-tttagtgacacatgcaagtactatgttttttag