ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

ATATCATTAAGCAAATTGGGATGTTTACTTTCACTGGGCTGAATAGCGAACAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtctattcaacttttataagtatattgtgtttcctgtatttttgtagtctagttgctacttaacagtggctactttggacttcttattaatct...

Basic information

species	Zea mays
transcript	GRMZM2G094712_T02
intron #	10
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 11

ATATCATTAAGCAAATTGGGATGTTTACTTTCACTGGGCTGAATAGCGAACAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtctattcaacttttataagtatattgtgttt---cctgtatttttgtagtctagttgctacttaacagtggctactttggacttcttattaatct----------------------------------------------------------------------------------------
| ||||||||||| || || ||||| |||||||||||||| || || || ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||     ||| | || || |       | |   ||     |||||  |   ||||| |  | ||   ||        | |||    |   ||  | |                                                                                          
ACATCATTAAGCAGATCGGAATGTTCACTTTCACTGGGCTCAACAGTGATCAAGTGGCTTTCATGAGGCAGGAATACCACATTTACATGACATCTGATGGgtaattgtctaatttagctattgtgcaacactcgcaattatgtttgtatgatctaagtct-gcagttatacaaactatataatttttagttctataacagtagatgatctatcttactgtttctatggtagtttcctttgctaaatgttcctttttagctcatctttacaagccaaatatttctcttgcag

upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 9
lower sequence: Vv11s0016g03720.t01 (Vitis vinifera), 5'ss of exon 11

ATATCATTAAGCAAATTGGGATGTTTACTTTCACTGGGCTGAATAGCGAACAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttg-tctattcaacttttataagtatattgtgtttcctgtatttttgtagtctagttgctacttaacagtggctactttggacttcttattaatct--
| || || ||||||||||| ||||| |||||||| ||||||||||  || |||||||| |||||||   ||||||| ||||| || ||||||||||||||||||   | |||||||  |||  | ||  |||  |        ||   ||  |     | | | |  | | | |||  |  | |  | |  ||  |   ||  
ACATTATAAAGCAAATTGGAATGTTCACTTTCACAGGGCTGAATACTGAGCAAGTCGCCTTCATGACCAAGGAATATCACATCTACATGACATCTGATGGgtaagaggatctattc--cttacacaatcataaggaagcctaggt-ccttaattacagaatggatcttaatctgtgtttcttctaaaataatttcttggctga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|67020983|gb|CO449732.1|CO449732

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32927305|gb|CF032117.1|CF032117

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|149072592|gb|EE286792.2|EE286792

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32927492|gb|CF032304.1|CF032304

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|31356689|gb|CD441046.1|CD441046

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|92088137|gb|EB484368.1|EB484368

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGCTTTGAGCATGAGGACTGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGG-TTTGAGCATGAGGACTGTGCCCCATCTTGCAG

EST: gi|60341541|gb|DN208514.1|DN208514

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|7162311|gb|AW519918.1|AW519918

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|33942473|gb|CF349073.1|CF349073

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|78027140|gb|DV495527.1|DV495527

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32927574|gb|CF032386.1|CF032386

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32867607|gb|CF007289.1|CF007289

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|56382527|gb|CV985196.1|CV985196

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|4775842|gb|AI664847.1|AI664847

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|4874332|gb|AI673852.1|AI673852

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|78080376|gb|DV508788.1|DV508788

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|211187210|gb|FL054032.1|FL054032

EST:     CAAGTGGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32934326|gb|CF039138.1|CF039138

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32835718|gb|CD975396.1|CD975396

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|12970347|gb|BG266938.1|BG266938

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32929180|gb|CF033992.1|CF033992

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCGGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG

EST: gi|32927870|gb|CF032682.1|CF032682

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|38502478|gb|CF972338.1|CF972338

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|24767776|gb|CA402912.1|CA402912

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCTGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32837083|gb|CD976761.1|CD976761

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|24764022|gb|CA399191.1|CA399191

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|33095048|gb|CF055042.1|CF055042

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|31362360|gb|CD446717.1|CD446717

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32846172|gb|CD985853.1|CD985853

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG

EST: gi|211132390|gb|FL440019.1|FL440019

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|211187208|gb|FL054030.1|FL054030

EST:     CAAGTGGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32929191|gb|CF034003.1|CF034003

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|24764697|gb|CA399860.1|CA399860

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32928849|gb|CF033661.1|CF033661

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32833147|gb|CD972825.1|CD972825

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|211132391|gb|FL440020.1|FL440020

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|78080377|gb|DV508789.1|DV508789

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|4874452|gb|AI673972.1|AI673972

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32915489|gb|CF020301.1|CF020301

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32927161|gb|CF031973.1|CF031973

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32846059|gb|CD985740.1|CD985740

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGGGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|24767122|gb|CA402266.1|CA402266

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|5739949|gb|AI947639.1|AI947639

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCNNAGCATGGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGC
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATC--AGCAT-GGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGC

EST: gi|5936779|gb|AW060047.1|AW060047

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|6918687|gb|AW400217.1|AW400217

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|24769848|gb|CA404977.1|CA404977

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|58202799|gb|CX779586.1|CX779586

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|33102270|gb|CF062230.1|CF062230

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG

EST: gi|4837574|gb|AI670664.1|AI670664

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|24769230|gb|CA404359.1|CA404359

EST:     CAAGTCGCATTCATGAGGCAGGAATACCCCATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|10450878|gb|BE924802.1|BE924802

EST:     CAAGTCGCATTCATGAGGCAGGAATACCCCATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32835738|gb|CD975416.1|CD975416

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG

EST: gi|32837197|gb|CD976875.1|CD976875

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|61118378|gb|DN559339.1|DN559339

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|4775838|gb|AI664843.1|AI664843

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32929220|gb|CF034032.1|CF034032

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|4885950|gb|AI677070.1|AI677070

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAG

EST: gi|6564018|gb|AW231640.1|AW231640

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|20507971|gb|BQ279844.1|BQ279844

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|67026968|gb|CO455717.1|CO455717

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32927179|gb|CF031991.1|CF031991

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|33100553|gb|CF060513.1|CF060513

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG

EST: gi|32933396|gb|CF038208.1|CF038208

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG

EST: gi|32927057|gb|CF031869.1|CF031869

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|67038272|gb|CO464602.1|CO464602

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32930921|gb|CF035733.1|CF035733

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|4874418|gb|AI673938.1|AI673938

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|33100547|gb|CF060507.1|CF060507

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|32867606|gb|CF007288.1|CF007288

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA

EST: gi|31360460|gb|CD444817.1|CD444817

EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGGCTGTTTGAGCATG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 404

ATATCATTAAGCAAATTGGGATGTTTACTTTCACTGGGCTGAATAGCGAACAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGATGCCATACACGCTGCAGTTACTCAACTGAAATGAGGATAGTATCGCAGC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 899

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 931