1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
species | Zea mays |
transcript | GRMZM2G094497_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGCAGCT-CATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32929245|gb|CF034057.1|CF034057
genomic: GGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|5915388|gb|AW053029.1|AW053029
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|31352565|gb|CD436922.1|CD436922
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|6445489|gb|AW179407.1|AW179407
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32928465|gb|CF033277.1|CF033277
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|60353112|gb|DN220085.1|DN220085
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: GGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|31352616|gb|CD436973.1|CD436973
genomic: GGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32928932|gb|CF033744.1|CF033744
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGCCAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|67022236|gb|CO450985.1|CO450985
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|211474169|gb|FL062077.1|FL062077
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|67040204|gb|CO466459.1|CO466459
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32929097|gb|CF033909.1|CF033909
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32944174|gb|CF048993.1|CF048993
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATGCATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|60358048|gb|DN225021.1|DN225021
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: AGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32838699|gb|CD978380.1|CD978380
genomic: AGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|60345561|gb|DN212534.1|DN212534
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: AGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|6056572|gb|AW090977.1|AW090977
genomic: AGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|33092363|gb|CF052357.1|CF052357
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32928990|gb|CF033802.1|CF033802
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGTTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32944913|gb|CF049732.1|CF049732
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATGCATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|31352900|gb|CD437257.1|CD437257
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|31351441|gb|CD435798.1|CD435798
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|32928322|gb|CF033134.1|CF033134
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|211466584|gb|FL062035.1|FL062035
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|5871234|gb|AW017705.1|AW017705
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: CATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|60357117|gb|DN224090.1|DN224090
genomic: CATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|24934300|gb|CA452518.1|CA452518
genomic: ATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|33101328|gb|CF061288.1|CF061288
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|6021392|gb|AW066320.1|AW066320
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|213171194|gb|FM184433.1|FM184433
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: GCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|60344123|gb|DN211096.1|DN211096
genomic: GCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|33100800|gb|CF060760.1|CF060760
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|13125963|gb|BG316638.1|BG316638
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCAEST: gi|60343460|gb|DN210433.1|DN210433
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCA
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAGEST: gi|4152268|gb|AI372402.1|AI372402
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCEST: gi|31351755|gb|CD436112.1|CD436112
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCC
EST: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC