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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 11
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttact--accttgatagcttatctgtgttgatgtgatggcattatattctttcag
|||| ||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||| |||||||| |||||||||||||| ||||  | | | |||| || |||||| | ||||  ||    | |      | | | ||   |  |  || |||    |  | |   || | |          || ||  || ||   |   |  ||||   |  ||||||||  ||||  |||  || |   ||||  | | |                   
ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAGgtactttcttttctgttcttttattgagt-agcaaagatt---ttcttggtaagagtaact---ggctgcttcatactccacctcaatattatga----------cacatgaatgtaacttaatagatcttctatattttttactctacctcaatattttct---tgttactttcag------------------

upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 11
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgt-tacactttcacatggggcagctctggaattatttataact-aatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
 ||| || || ||||||||||| ||||| ||||| |||||||||||||||||||| || || || ||| |  ||||||| ||||||  ||  |      | | |   ||   ||   ||||| || | |   |  |  | || ||   ||||||| || ||   |||||         ||  | ||                                                                                            
-TATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGGtgggttctttgaagatttttggctgttataaataatgtataaaatgctaggttagtcacct---gaattatgtacaaaagaatttggtgcagaataaatctta-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 11
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtg--cttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagct-ctggaattatttataact-aatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
|||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| |  ||||||| ||||||   | ||  | | |||    |  ||       |||| ||  |        ||||  ||   |  ||||||| || ||   |||||         ||  | ||                                                                                            
ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctttgaagattttggctgctg------taaatattgtataaaatgctgggttagtcacctgaattatgtacaagagaatttggtgcagaataaatctta-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 11
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
|||| || |||||||||||||| || || ||||| || |||||||| ||||||||||| || ||||||||  |||| |||||||||  ||   |||||     ||   |   ||   ||  ||  |     |  |||   || |     |     | |  | ||   ||    |  ||   ||||  |                                                                                        
ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggtt---atgttgaagctttcagctgtaatgaacattgtataccaagttggattagttacaagagagaatttggcaaag--aatgcatcctaacattttaat----------------------------------------------------------------------------------------

upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA20G24070.2 (Glycine max), 5'ss of exon 12
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
|||| || |||||||||||||| || || ||||| || |||||||| ||||||||||| || ||||||||  |||| |||||||||  ||   |||||     ||   |   ||   ||  ||  ||    |  | |   |  |     |     | |  |  |   |||   |  ||   |||                                                                                            
ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggtt---atgttgaagctttcagctgtaatgaacattttacaccaagttcgattaattagaagagagaatttggc--acagaacgcatcctaacatttaatg----------------------------------------------------------------------------------------

upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 11
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
||||||| || |||||||| || |||||||| ||||||||||| || |||||||| || |||||||| || || |||||||||||  |     |      |||    ||||    |  || ||||   ||         |||   |   || ||      || | | ||  | | ||  ||| || |    |   | | ||                                                                           
ATATCACTCATCCAACTCCGGATCTTACTGGTTACATTACTGAAGGTCAGATATATATCGATAGGCAACTTCACAACAGACAGgtaataaataa------ctaccgctgaggc-cctgatcttactggttt--------cagtaatattatgatccggctctgaatgaatgtatctttgtttcttccctgaa---aaacag---------------------------------------------------------------------------

upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 11
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttt---tctatgttttctattcttgagttatcaaatgttacactttcacatggggca-gctctggaattatttataactaatttaacat--tttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
||||||| ||||| ||||| || |||||||| |||||||||||||| |||||||| ||||||||||| || || |||||||||||||  |         |||| |     |   | || |   | | | ||  |||||    ||    |  |||   ||| | |   |||||  ||  | | |  || | |  |  |  |    || ||                                                                         
ATATCACTCACCCTACTCCGGATCTTACTGGTTACATTACTGAGGGTCAGATATATATTGATAGGCAACTTCACAACAGACAGgtgcaataagctcgacttttttgcatatatctcattatgagct-ctctaacacatcaaacataagcaagaaaggtttctcatacatttacaatgatctctgattctgtcttggttcttccctaaaacag----------------------------------------------------------------------

upper sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 11
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgctttt---ctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag
|||| || || |||||||| || |||||||| || ||||||||||| |||||||||||||||||||| ||||| ||| | ||||||  ||    | |   | | | ||| ||    |  | || ||      || |    ||||  | || | || | |       |  |    |||  || ||||                                                                                             
ATATTACGCATCCAACTCCAGATCTTACTGGTTATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGgtgagttgaaaccaaactctttcttcatgttaaaatacatatt-tgtcatctctcatggca--tatgcacttttctcctgactacgtggagtttgctagtttt---------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13198699|gb|BG354501.1|BG354501
EST:     GGCAGCT-CATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: GGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32929245|gb|CF034057.1|CF034057
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|5915388|gb|AW053029.1|AW053029
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31352565|gb|CD436922.1|CD436922
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|6445489|gb|AW179407.1|AW179407
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928465|gb|CF033277.1|CF033277
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60353112|gb|DN220085.1|DN220085
EST:     GGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: GGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31352616|gb|CD436973.1|CD436973
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928932|gb|CF033744.1|CF033744
EST:     ACATTACTGAGGGCCAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|67022236|gb|CO450985.1|CO450985
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|211474169|gb|FL062077.1|FL062077
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|67040204|gb|CO466459.1|CO466459
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32929097|gb|CF033909.1|CF033909
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32944174|gb|CF048993.1|CF048993
EST:     ACATTACTGAGGGACAGATATGCATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60358048|gb|DN225021.1|DN225021
EST:     AGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: AGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32838699|gb|CD978380.1|CD978380
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60345561|gb|DN212534.1|DN212534
EST:     AGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: AGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|6056572|gb|AW090977.1|AW090977
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|33092363|gb|CF052357.1|CF052357
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928990|gb|CF033802.1|CF033802
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGTTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32944913|gb|CF049732.1|CF049732
EST:     ACATTACTGAGGGACAGATATGCATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31352900|gb|CD437257.1|CD437257
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31351441|gb|CD435798.1|CD435798
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928322|gb|CF033134.1|CF033134
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|211466584|gb|FL062035.1|FL062035
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|5871234|gb|AW017705.1|AW017705
EST:     CATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: CATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60357117|gb|DN224090.1|DN224090
EST:     ATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|24934300|gb|CA452518.1|CA452518
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|33101328|gb|CF061288.1|CF061288
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|6021392|gb|AW066320.1|AW066320
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|213171194|gb|FM184433.1|FM184433
EST:     GCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: GCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60344123|gb|DN211096.1|DN211096
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|33100800|gb|CF060760.1|CF060760
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|13125963|gb|BG316638.1|BG316638
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCA
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCA
EST: gi|60343460|gb|DN210433.1|DN210433
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|4152268|gb|AI372402.1|AI372402
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCC
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCC
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC