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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGAGATGCCTGTGTTCATGTCGTGAACACTTGGGATGAATTCACAACTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaagttgtcatttttttgtttatcagatttgtctgctgtcctgattcgctctttgaaaaccttggcaacaattaacaaataagagttatcaaca...

Basic information

species Zea mays
transcript GRMZM2G094123_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094123_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g25710.3 (Oryza sativa), 5'ss of exon 10
AAAGAGAGATGCCTGTGTTCATGTCGTGAACACTTGGGATGAATTCACAACTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaagttgtcatttttttgtttatcagatttgtctgctgtcctgattcgctctttgaaaaccttggcaacaattaacaaataagagttatcaaca---
|||||||||||||||  || | || || ||||| ||||||||||||| |   ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| |||     |  ||| |  | |   |   |     || | |  |  || || ||    ||   || | || |   |     |    ||| ||  |    
AAAGAGAGATGCCTGCCTTAAGGTTGTTAACACCTGGGATGAATTCATAGTGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgagacctt--tttatgagatctccctctcaccatgttattttt-ttagcactagttaactatttggaatatccagtgtgttcatgttctcttctaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|62525869|gb|DN828517.1|DN828517
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|60358761|gb|DN225734.1|DN225734
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|60353211|gb|DN220184.1|DN220184
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|60347786|gb|DN214759.1|DN214759
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|113851989|gb|DW971315.1|DW971315
EST:     TGCTCTGAAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGAC
genomic: TGCTCTG-AATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGAC
EST: gi|24766734|gb|CA401881.1|CA401881
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|50325822|gb|CO520948.1|CO520948
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|5739769|gb|AI947345.1|AI947345
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|211072969|gb|FL236337.1|FL236337
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|60347846|gb|DN214819.1|DN214819
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|5762122|gb|AI967170.1|AI967170
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|6742646|gb|AW313461.1|AW313461
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|91052462|gb|EB162880.1|EB162880
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAA
EST: gi|60357064|gb|DN224037.1|DN224037
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAA
EST: gi|31354358|gb|CD438715.1|CD438715
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|76286941|gb|DV026509.1|DV026509
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGT-AAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|5922251|gb|AW055540.1|AW055540
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|211378923|gb|FL475780.1|FL475780
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|60339891|gb|DN206864.1|DN206864
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|50325823|gb|CO520949.1|CO520949
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|6654144|gb|AW267549.1|AW267549
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|78021806|gb|DV490193.1|DV490193
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|91055004|gb|EB165422.1|EB165422
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|6466787|gb|AW191447.1|AW191447
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|60353004|gb|DN219977.1|DN219977
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|60348773|gb|DN215746.1|DN215746
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|113811049|gb|DW934015.1|DW934015
EST:     TGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATAGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGAC
genomic: TGCTCTGAATAACAAAAAGTTGATCTTGGCTCCAT-GGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGAC
EST: gi|5922253|gb|AW055542.1|AW055542
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|6501100|gb|AW202473.1|AW202473
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|6539051|gb|AW225190.1|AW225190
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|166673429|gb|EG176073.1|EG176073
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAA
EST: gi|37387552|gb|CF630973.1|CF630973
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|5296270|gb|AI782950.1|AI782950
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|5791178|gb|AI977970.1|AI977970
EST:     CTGCTCTGAATACCAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|5804624|gb|AI979594.1|AI979594
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|71332072|gb|DR802940.1|DR802940
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|12968572|gb|BG265518.1|BG265518
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|91055003|gb|EB165421.1|EB165421
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|6526838|gb|AW216107.1|AW216107
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|24769247|gb|CA404376.1|CA404376
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|5847095|gb|AW000174.1|AW000174
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|6827734|gb|AW331377.1|AW331377
EST:     CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAGATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCG
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
EST: gi|91052461|gb|EB162879.1|EB162879
EST:     CTGCTTTGAATAACAAAAAGTTGATTTTGGCTCCATGGTGTGATGAGGAG                         GAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA
genomic: CTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 297

AAAGAGAGATGCCTGTGTTCATGTCGTGAACACTTGGGATGAATTCACAACTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCAAAAACATTGTGTACTCCATTTGAGCAGCCAGAACTTCCAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 308

AAAGAGAGATGCCTGTGTTCATGTCGTGAACACTTGGGATGAATTCACAACTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCAAAAACATTGTGTACTCCATTTGAGCAGCCAGAACTTCCAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 361

AAAGAGAGATGCCTGTGTTCATGTCGTGAACACTTGGGATGAATTCACAACTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCAAAAACATTGTGTACTCCATTTGAGCAGCCAGAACTTCCAGAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 188

AAAGAGAGATGCCTGTGTTCATGTCGTGAACACTTGGGATGAATTCACAACTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaag ... ccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCAAAAACATTGTGTACTCCATTTGAGCAGCCAGAACTTCCAGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGAGAGATGCCTGTGTTCATGTCGTGAACACTTGGGATGAATTCACAACTGCTCTGAATAACAAAAAGTTGATCTTGGCTCCATGGTGTGATGAGGAGgtacttgaagttgtcatttttttgtttatcagatttgtctgctgtcctgattcgctctttgaaaaccttggcaacaattaacaaataagagttatcaaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaataa