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GGTCAAAACAAAAGTCATAGATGATGACCTGAATCCGGAATGGAATGAAACATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctatatgcatatatatttttgtcttgttcctttgttggaatcgtcacttgcatcaaggaaaaaatatcttcataaaagaggattggtgcaccgt...
species | Zea mays |
transcript | GRMZM2G092129_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAG GTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAAEST: gi|71331352|gb|DR802510.1|DR802510
genomic: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAA
EST: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTA-TTTTGAG GTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAAEST: gi|211335355|gb|FL444766.1|FL444766
genomic: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAA
EST: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAG GTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAAEST: gi|32803298|gb|CD955534.1|CD955534
genomic: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAA
EST: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAG GTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAAEST: gi|67025946|gb|CO454695.1|CO454695
genomic: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAA
EST: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAG GTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAAEST: gi|67011685|gb|CO440434.1|CO440434
genomic: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAA
EST: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAG GTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAAEST: gi|211220820|gb|FL457379.1|FL457379
genomic: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAA
EST: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAG GTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAAEST: gi|111145863|gb|EE258112.1|EE258112
genomic: CATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAA
EST: ATTTGACTTGATTGTCGAAGACAAAGAAAACCCAATCTGTTATTTTTGAG GGTTTATGATGGAAGACAAACTTCAGCAAGACNAAGAAGACTAGG
genomic: ATTTGACTTGATTGTCGAAGACAAAGAAA-CCCAATCTGTTATTTTTGAGgtaattctat ... gacttcacagG-TTTACGACG-AAGACAAACTTCAGCAAGAC-AAGA-GACTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAAAACAAAAGTCATAGATGATGACCTGAATCCGGAATGGAATGAAACATTTGACTTGATTGTCGAAGACAAAGAAACCCAATCTGTTATTTTTGAGgtaattctatatgcatatatatttttgtcttgttcctttgttggaatcgtcacttgcatcaaggaaaaaatatcttcataaaagaggattggtgcaccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaga