Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAAGAATCGTTCAACCTGTTTCTTGAGAAAGTCGTAACAGTCTTGCAAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAGgtaaatgacatgcaaccaattcaagttatgatacacaaacaatctgacacatgaacatgatcgattttaatgatatgtgatttacagaaaccatcactattttttgtgcttaccataataccatgtgttctgcag

Basic information

species Zea mays
transcript GRMZM2G092123_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092123_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g17634.1 (Oryza sativa), 5'ss of exon 10
GAGGAAAGAATCGTTCAACCTGTTTCTTGAGAAAGTCGTAACAGTCTTGCAAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAGgtaaatgacatgcaaccaattcaagttatgatacacaaacaatctgacacatgaacatgatcgattttaatgatatgtgatttacagaaaccatcactattttttgtgcttaccataataccatgtgttctgcag
|||||||||||| ||||| ||  |||||||||||||   |||| ||||||| ||||||  |||||| ||||||| ||||||||||||||| ||||||||||||| |    |      |  | |  || |  |    | | || || | | |   |  || |    |||     ||  | | |||||  |    |  | ||||                                 
GAGGAAAGAATCATTCAAGCTCGTTCTTGAGAAAGTGACAACATTCTTGCAGAAAGATGTTGATCAAAACCAAACTGTCGATGTTCGTGGGCTTTCAAAGgtaatttgactatggata--tgatatttttgtttttagagaa-ctcataaaaagatctgcttacctttg----tacattagttacaagagaatttgcaatttccaac----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32827599|gb|CD967277.1|CD967277
EST:     AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAG                         GTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
genomic: AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAGgtaaatgaca ... tgttctgcagGTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
EST: gi|32920226|gb|CF025038.1|CF025038
EST:     AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAG                         GTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
genomic: AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAGgtaaatgaca ... tgttctgcagGTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
EST: gi|32827394|gb|CD967072.1|CD967072
EST:     AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAG                         GTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
genomic: AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAGgtaaatgaca ... tgttctgcagGTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
EST: gi|86473892|gb|DY240262.1|DY240262
EST:     AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAG                         GTTGAAGCTCGAATTGTTGTTCTTTCTGTCCTTCGGAAGATCAAAGAGCAA
genomic: AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAGgtaaatgaca ... tgttctgcagGTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
EST: gi|32920779|gb|CF025591.1|CF025591
EST:     AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAG                         GTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
genomic: AAAAAGATACTGATCAGAACCAAATTGTCGATGTTCGTGGCCTTTCAAAGgtaaatgaca ... tgttctgcagGTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
EST: gi|32920532|gb|CF025344.1|CF025344
EST:     TCGATGTTCGTGGCCTTTCAAAG                         GTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA
genomic: TCGATGTTCGTGGCCTTTCAAAGgtaaatgaca ... tgttctgcagGTTGAAGCTCGAATTGTTGTTCTCTCTGTCCTTCGGAAGATCAAAGAGCAA