Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATTATGTTGCATGGGTTTGCGATCAGGATGCTTATGCTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactgtcaaatgtgtgttactttgctaattatctaggattgttattgtggactgttcatcgctgatgaagcatataatgttcctggttggttgat...

Basic information

species Zea mays
transcript GRMZM2G090087_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090087_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g45960.1 (Oryza sativa), 5'ss of exon 10
GTTGATTATGTTGCATGGGTTTGCGATCAGGATGCTTATGCTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactgtcaaatgtgtgttactttgctaattatctaggattgtt-attgtgg--actgttcatcgctgatgaagcatataatgttcctggttggttgat-
||||||||  |||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||        | ||  || |||  || ||  ||  || |  |  || | ||||   |    || |  |  || |   || | |  | | |  ||  || || 
GTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGgtaatagtga--agattagtattatgttccttctttgcttgagtctttgactgtgatcatgactcttgacatataacttatgttacatgcttcttt--tttatc

upper sequence: GRMZM2G090087_T03 (Zea mays), 5'ss of exon 10
lower sequence: EFJ29772 (Selaginella moellendorffii), 5'ss of exon 10
GTTGATTATGTTGCATGGGTTTGCGATCAGGATGCTTATGCTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactgtcaaatgtgtgttactttgctaattatctaggattgttattgtggactgttcatcgctgatgaagcatataatgttcctggttggttgat
 |||| || ||||||||||||||||| |||||||| ||||| || || |||||||| || || || |||||  |||| ||||||||| ||||  | |||||    | | |   |  | ||      |  |     ||  |||  |                                             
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgtcgatactgt----tttcttaaagctagcaggagctgaaaagccgtagttgcag---------------------------------------------

upper sequence: GRMZM2G090087_T03 (Zea mays), 5'ss of exon 10
lower sequence: EFJ08918 (Selaginella moellendorffii), 5'ss of exon 10
GTTGATTATGTTGCATGGGTTTGCGATCAGGATGCTTATGCTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactgtcaaatgtgtgttactttgctaattatctaggattgttattgtggactgttcatcgctgatgaagcatataatgttcctggttggttgat
 |||| || ||||||||||||||||| |||||||| ||||| || || |||||||| || || || |||||  |||| ||||||||| ||||  | |||||    | | |   | || ||      |  |     ||  |||  |                                             
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgtcgatactgt----tttcttaaagttagcaggagcttaaaagccgtagttgcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211226663|gb|FL216925.1|FL216925
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTGTCTGAAAG
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTT-TCTGAAAG
EST: gi|211228708|gb|FL216926.1|FL216926
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|67019711|gb|CO448460.1|CO448460
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|33101148|gb|CF061108.1|CF061108
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|67026280|gb|CO455029.1|CO455029
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAA-TGAAGAA-CTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|67024223|gb|CO452972.1|CO452972
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|211228710|gb|FL216928.1|FL216928
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGGAAGAAACTTTCTGAAAG
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATG-AAGAAACTTTCTGAAAG
EST: gi|24773212|gb|CA408466.1|CA408466
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|67023454|gb|CO452203.1|CO452203
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|32846970|gb|CD986651.1|CD986651
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|211120258|gb|FL200679.1|FL200679
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|32847832|gb|CD987513.1|CD987513
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: gi|211228712|gb|FL216930.1|FL216930
EST:     CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG                         AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAAG
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAA-G