1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCAACGGAAGTCATTGCCCGGGGAATGGACTTCAAAGGTGTCGCCTCTGTGATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaagacatttggatttgactgtcgtggcacttgtgcctgcacactcacaatgttgatgcctgagctctgatgtacatttgattggctcaatgttg...
species | Zea mays |
transcript | GRMZM2G083580_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|71766777|gb|DR964714.1|DR964714
genomic: AGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|87156012|gb|DY400801.1|DY400801
genomic: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GATAAACTACGATTTTCCAGAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|40302886|gb|CK347273.1|CK347273
genomic: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GATAAACTACGATTTTCCAGAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|60356063|gb|DN223036.1|DN223036
genomic: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|71766778|gb|DR964715.1|DR964715
genomic: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|78115305|gb|DV533693.1|DV533693
genomic: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|26457130|gb|CA828713.1|CA828713
genomic: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAGEST: gi|60397325|gb|DN230141.1|DN230141
genomic: GAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
EST: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAG GGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
genomic: GATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaaga ... ctctgtacagGGCGATCCGGAAGAGCCGGTAGGTCCGGGGAGGCTATCACGTTCTTCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACGGAAGTCATTGCCCGGGGAATGGACTTCAAAGGTGTCGCCTCTGTGATAAACTACGATTTTCCGGAGTCGGCTGCTGCCTATATTCACAGGATAGgtaagaaagacatttggatttgactgtcgtggcacttgtgcctgcacactcacaatgttgatgcctgagctctgatgtacatttgattggctcaatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC