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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTACAAACACATTGGAGCGGGTAGCCCCTTTAACACATGCCATCGGCAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaatggactctgatgtttcttaatctagttacctataaccatatagatgttcttgctattgtgaaaatagtgttttcacataacacacggtgagcttaatgttgggcag

Basic information

species Zea mays
transcript GRMZM2G083344_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083344_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g15160.1 (Oryza sativa), 5'ss of exon 10
GTTGCTACAAACACATTGGAGCGGGTAGCCCCTTTAACACATGCCATCGGCAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaatggactctgatgtttcttaat--ctagttacctataaccatatagatgttcttgctattgtgaaa----atagtgttttcacataacacacggtgagcttaatgttgggcag---------------------------------------------------
||||||||||||||||| ||  ||||  ||||| ||||||||||  | ||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||||   |  | | | || |||| ||||   |    | |  ||  |||||   ||||||||| ||||  ||      || | ||||    ||  ||    |   | || | || |   |                                                   
GTTGCTACAAACACATTAGAAAGGGTGACCCCTCTAACACATGCTGTTGGCAATGTGTTAAAACGTGTCTTCGTCATTGGCTTCTCAATCATTGCATTCGgtactt---ttaattttaatctttcataatgattgtcgatcagtatgcatattcttgttcttgccattggcaagtgttgtactctttttttgtagaacttcatatacatagttttagtgtgcaaatgatctgatgtttttgtgtaatacttggtgaacttaatgttgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8665718|gb|BE186534.1|BE186534
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|211430251|gb|FL453372.1|FL453372
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGNAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|211525667|gb|FL445646.1|FL445646
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|71760100|gb|DR958037.1|DR958037
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|32928246|gb|CF033058.1|CF033058
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|5018389|gb|AI714582.1|AI714582
EST:     TCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGGTCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: TCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|32165070|gb|CD670388.1|CD670388
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|37381423|gb|CF627595.1|CF627595
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|71328475|gb|DR800887.1|DR800887
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|76930049|gb|DV172255.1|DV172255
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|71768355|gb|DR966292.1|DR966292
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|32935156|gb|CF039968.1|CF039968
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|32862760|gb|CF002442.1|CF002442
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|211083989|gb|FL462610.1|FL462610
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|113703585|gb|EE681089.1|EE681089
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|50328059|gb|CO523185.1|CO523185
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|78104082|gb|DV522500.1|DV522500
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTGG                         GCAACAAGATCCCCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
EST: gi|32837170|gb|CD976848.1|CD976848
EST:     CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCG                         GCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG
genomic: CAATGTGTTGAAACGTGTTTTCGTCATTGGCTTTTCCATCATCGCATTCGgtacttgaat ... tgttgggcagGCAACAAGATCACCACACAGACTGGAATTGGCACTTCCATTGCTGTTTCTG