1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTCAAATGGAAAAGAGATCACAGATAATGACATATTGGCATGGGCCAATAAGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAGgtaccatcgttcaatatatttcctagtgtgcatacctaattatttcatattatagttatagatattatagttatagataaatgaaatatatgcaattggc...
species | Zea mays |
transcript | GRMZM2G081380_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAG GATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTGTGEST: gi|13178228|gb|BG349486.1|BG349486
genomic: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAGgtaccatcgt ... ctaattacagGATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTGTG
EST: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAG GATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTGTGEST: gi|149096921|gb|EE182719.2|EE182719
genomic: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAGgtaccatcgt ... ctaattacagGATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTGTG
EST: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAG GATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTGTGEST: gi|60340714|gb|DN207687.1|DN207687
genomic: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAGgtaccatcgt ... ctaattacagGATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTGTG
EST: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAG GATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTG-G
genomic: AGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAGgtaccatcgt ... ctaattacagGATAAAAGCCTTTCAAGTGGCACCTTTTTCCTTGACTTACTAAGTGCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAATGGAAAAGAGATCACAGATAATGACATATTGGCATGGGCCAATAAGAAAGTAAAAGATTCTGGAAAGCACCACTCTTATATGCAAAGTTTCAAGgtaccatcgttcaatatatttcctagtgtgcatacctaattatttcatattatagttatagatattatagttatagataaatgaaatatatgcaattggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa