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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctctctggacaccagcaattaaaaaacaaatccagaaactactctgctttcatatatgtgcagtaatttctccagaaactactctggacaccagcttcatttcttgccatacaacctctgcttttggtatgaacatctggtatcttaattatag

Basic information

species Zea mays
transcript GRMZM2G081188_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081188_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g66350.1 (Oryza sativa), 5'ss of exon 10
GTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcct-----ctctggacaccagcaattaaaaaacaaatccagaaactactctgctttcatatatgtgcagtaatttctccagaa-actactctggacaccagct--tcatttcttgccatacaacctctgcttttggtatgaacatctggtatcttaattatag
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GATCACGATTTGGAGAAGCGTTTCAAGAACCTGCTTCATTTGTTGCCATACGGCCATTGTTTGAGgtacatccttagttccttgaccaccagcacataaaca-caaacccacagaagacattgcattt-tctgtttcc-----ctcttaaagagtgtcatttcattcactggtcggctatatctgggcatatgaaatatttccttcatatatctaacttacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240504|gb|DT648418.1|DT648418
EST:     AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG                         GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: gi|211302733|gb|FL372536.1|FL372536
EST:     AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGAACTCTGTTTGAG                         GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: gi|32936978|gb|CF041797.1|CF041797
EST:     GAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG                         GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
genomic: GAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: gi|31353527|gb|CD437884.1|CD437884
EST:     AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG                         GATGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: gi|211481484|gb|FL479226.1|FL479226
EST:     TCTTGCCATACGACCTCTGTTTGAG                         GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
genomic: TCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: gi|32930803|gb|CF035615.1|CF035615
EST:     AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG                         GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT