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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATGgtaaccctcataatgatgtatgtgttaaaagataataatttggaatttttgccatttatctttgtggccaatgaacaaagaaaggtcaaatttcaggcta...

Basic information

species Zea mays
transcript GRMZM2G078458_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T04 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 11
GAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATGgtaaccctcataatgatgtatgtgttaaaagataataatttggaatttttgccatttatctttgtggccaatgaacaaagaaaggtcaaatttcaggcta---
|||||||| ||||| |||||||||||  |||||||||||||||| ||||||||||||||||| ||||  | ||  | |   || |   | |    ||||  |  |  |   ||| | | | | ||  ||   |    | |  |    |||| | | |   
GAACTACTATACCTCTATGGATTTGTAATTGACAACAATCCTGACGATTATCTCATGgtaacactcagtaagagat-tacttttagcaacaggtgtttgtcaactcagt--tttctttgtttagcatattccctgccagatattctctttctgtcaaaca

upper sequence: GRMZM2G078458_T04 (Zea mays), 5'ss of exon 11
lower sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 11
GAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATGgtaaccctcataatgatgtatgtgttaaaagataataatttgga-atttttgccatttatctttgtggccaatgaacaaagaaaggtc---aaatttcaggcta-------
||  |||||||||| |||||||||||  |||| || ||||| ||||| ||||||||||||| |             |||| | | ||| |  ||  |||   |||| |   |  |    |   || | || |    |    |||        || | | ||       
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctc-----------atgtataagaagtttctatcttgtccatttattatacatgctctccaggtccattacagtactttggtttctggtgtttatgttaatttaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211219812|gb|FL295368.1|FL295368
EST:     ATTATCTCATG                         GTTCATTATCCTTTGGAAGCTCTTAGACAGATCCAGTCTGCTGATATAAAA
genomic: ATTATCTCATGgtaaccctca ... ctaagtgcagGTTCATTATCCTTTGGAAGCTCTTAGACAGATCCAGTCTGCTGATATAAAA
EST: gi|211219813|gb|FL295369.1|FL295369
EST:     TGTACCTTTATGGATTTGNGGTTGACAACAATCCTGATGATTATCTCATG                         GTTCATTATCCTTTGGAAGCTCTTANACAGATCCAGTCTGCTGATATAAAA
genomic: TGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATGgtaaccctca ... ctaagtgcagGTTCATTATCCTTTGGAAGCTCTTAGACAGATCCAGTCTGCTGATATAAAA