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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTCCAAAGTGGTGGGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcgaatgaatcttcattgatttcgtttccatagttttatgtatcagaagttcagtaatttgttgctttgttaaaatcatgctttaatgtggaatgacag

Basic information

species Zea mays
transcript GRMZM2G073571_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073571_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 10
ATAGTCCAAAGTGGTGGGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcgaatgaatcttcattgatttcgtttccatagttttatgtatcagaagttcagtaatttgttgctttgttaaaatcatgctttaatgtggaatgacag
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ATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctc--acaactcagtactatttt----tctattgctttctttgccttgtgctctatg--cagaaacct-----aaatcttgctttattctggattgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15177587|gb|BI398526.1|BI398526
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|15323596|gb|BI478854.1|BI478854
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|15188204|gb|BI417181.1|BI417181
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGTTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|16137338|gb|BI894203.1|BI894203
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|16137339|gb|BI894204.1|BI894204
EST:     -CAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCTATCTGCTGAGTCTGGTTCAGAAGCTGATGA
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATC-AACTGCTGAGTCTGGTTCAGAAGCTGATGA
EST: gi|32832349|gb|CD972027.1|CD972027
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAACCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|32847771|gb|CD987452.1|CD987452
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAACCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|3172014|gb|AJ006545.1|AJ006545
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAACCGCCACACA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|15177586|gb|BI398525.1|BI398525
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|8383108|gb|BE055991.1|BE055991
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
EST: gi|15323597|gb|BI478855.1|BI478855
EST:     CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCA                         ATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT
genomic: CCAATGGTGAGGAAAAATTTATTACTTACGCCAAACCGAAGCGCCACGCAgtaagtttcg ... ggaatgacagATGAGAGGGAGTGACACATCAACTGCTGAGTCTGGTTCAGAAGCTGATGAT