Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTAGCCGCCCTTTACGATGATAGAGTCCTATTGATTTTTGGAGGTCAGTCGAAGTCCAAGACCCTGAATGATATTCATGCTCTAGATTTTGAAACAgtaagtattgtcgtgttactttattggttttgcttgttaacagattgctgaaaaatttgatatctttatactattag

Basic information

species Zea mays
transcript GRMZM2G070553_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g43590.4 (Oryza sativa), 5'ss of exon 10
TCATGTAGCCGCCCTTTACGATGATAGAGTCCTATTGATTTTTGGAGGTCAGTCGAAGTCCAAGACCCTGAATGATATTCATGCTCTAGATTTTGAAACAgtaagtattgtcgtgttactttattggttttgcttgttaaca-gattgctgaaaaatttgatatctttatactattag
|||||| || || || || ||||||||| | |||||||| |||||||| || || || ||||| || || |||||| ||||||||||||| || ||||| |||| |  | ||| ||| | || | |||||| |||||| |   | || ||||||||     | |  || |        
TCATGTGGCTGCTCTGTATGATGATAGAATTCTATTGATCTTTGGAGGCCAATCAAAATCCAAAACACTCAATGATGTTCATGCTCTAGACTTCGAAACGgtaatttctatcgggtttccttgtaggtttttcttgttgatgcgcttactgaaaaaaccattcttcttgttag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558216|gb|CA830451.1|CA830451
EST:     GCTCTAGATTTCGAAACA                         ATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCA
genomic: GCTCTAGATTTTGAAACAgtaagtattg ... atactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCA