1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATTCATTTTCTCTTTTACGTTTATAAACCTGCCGATATAGGTGCTTGCATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttatcacgtaatactgttgaagtaaaaggaatattagcagtatattttttttggtgagctattcctctatgccttgacaattaacctacacctgtacctatag
species | Zea mays |
transcript | GRMZM2G070422_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|60345014|gb|DN211987.1|DN211987
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|116819942|gb|EC863109.1|EC863109
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: A-TCGAAGCTGGGCGAAAAGGCAAAATCAGAGTT-ACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|211078513|gb|FL462572.1|FL462572
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: GCAAAATCAGAGTTAACACCWTATTCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGEST: gi|60396705|gb|DN229571.1|DN229571
genomic: GCAAAATCAGAGTTAACACCATA-TCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATG
EST: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|9254476|gb|BE344944.1|BE344944
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|6466754|gb|AW191414.1|AW191414
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTACCCCCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|211373107|gb|FL457929.1|FL457929
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|44901425|gb|CK827970.1|CK827970
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: ATCAGAGTTAACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|211297571|gb|FL439288.1|FL439288
genomic: ATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: ATTCGAAGCTGGGCGWAAAGGCAAAATCAGAGTTAACACCATATCAGCAG GCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGAEST: gi|116826086|gb|EC869836.1|EC869836
genomic: ATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
EST: CATATCAGCAG GCCCTC-TGGGAGCCGAGCTGCT-AGGCAATTGGATTTATTGAGAAGATGA
genomic: CATATCAGCAGgtacttttat ... gtacctatagGCCCTCTTGGGAGCCGAGCTGCTAAGGCAATTGGATTTATTGAGAAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTCATTTTCTCTTTTACGTTTATAAACCTGCCGATATAGGTGCTTGCATTCGAAGCTGGGCGAAAAGGCAAAATCAGAGTTAACACCATATCAGCAGgtacttttatcacgtaatactgttgaagtaaaaggaatattagcagtatattttttttggtgagctattcctctatgccttgacaattaacctacacctgtacctatag
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