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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccatatctctttattctttcgctagaaacttctagaatggagtgtggagtacggaatatgattgttttattgtagattgattcttataggagtt...

Basic information

species Zea mays
transcript GRMZM2G069758_T04
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 10
GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccatatctctttattctttcgctagaaacttctagaatggagtgtggagtacggaatatgattgttttattgtagattgattcttataggagtt-----
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GAACAACCACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACGgtatgcactcaact----gtggtgacagagggatcctttctaatattg-acgtaattttccatgctctttttttgtggtttcatagtcaacatctaggtcactgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166331|gb|BM336170.1|BM336170
EST:     GATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: GATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
EST: gi|60397480|gb|DN230296.1|DN230296
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT