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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattcttttctgagttgcagttttaatgttctattttgtactattttattgattgccactaactaatccattgcgctggtgctag

Basic information

species Zea mays
transcript GRMZM2G069676_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069676_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 11
GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattcttttctgagttgcagttttaatgttctattttgtactattttattgattgccact----aactaatccattgc--gctggtgctag-----
|||||| ||||||||||| || ||||||||||| || |||||| ||||||||||||||||| |||||||||||||||| || |||||||        |    |  | |    ||     ||||||     |||  |    | ||||    ||||    |||       |||  ||       
GTCTGCTGCTGTTGATTCAAGTGGTCGTGAGTTAAACCGTAACAGATTGATTGCTTTGATGTCTGCCATAGTTCTTGAAGAGgtaagatctcacaaggcaaagttggtcgtgtgactagttttgtgggcatttgctatgagacactctagaactgtggcatgattaaatggcactctgaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211441851|gb|FL182588.1|FL182588
EST:     TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA                         CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: gi|32933693|gb|CF038505.1|CF038505
EST:     TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA                         CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: gi|60341753|gb|DN208726.1|DN208726
EST:     TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA                         CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: gi|32832812|gb|CD972490.1|CD972490
EST:     TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA                         CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: gi|33094155|gb|CF054149.1|CF054149
EST:     TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA                         CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT