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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttcttatcatctgaatgagaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcag

Basic information

species Zea mays
transcript GRMZM2G069631_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 10
TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttcttatcatctgaatgagaatgaaagagccg-tatcaatatctgctgtaatctgatagcgtg--ggtaacatcttttgcag
|| |||||| ||||||||||||||||||||||||||||||| || ||||||||||| ||| | ||||||||||| |||| ||  | ||||||||     |||  | |  | | || |  ||    ||||| ||  ||||    |  ||||||||||||
TTATGGGATATAAACATGGATTCAGGCCCAGTTGCAACTTTCCAAGTTCATGAATATTTAAGACCTAAGgtgaagtttcgta--acctgaatgatggcaaaaatgtcaatgttaagacatgtcacaatctaatgccgtgttaatttcatcttttgcag

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 10
TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttcttatcatctgaatgagaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcag-
||||||||  | || |||||||||||||| ||||||||||| ||||||||||| || ||  | || |||||    |   | || |  |  ||||   |       | || |   | |  | | |||   | ||   |   |         |||   
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgtttgataagtgatgaatt--atgaatttctttctactgt-tttgtctgagttataactggttatgctttttgtttgaacgtgccag

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 10
TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttcttatcatctgaatgag-aatgaaagagccgtatcaatat-ctgctgtaatctgatagcgtgggtaacatcttttgcag-----------
||||||||  | || |||||||||||||| ||||||||||| ||||||||||| || ||| | || ||||| |  || ||     | |  || ||  |||||  |    | ||| | | ||||| |     | ||     ||| | || || ||              
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGgttagattcctg--tgtttagataagtgatgaattatgaatttcattctactgctttgtcgagttataactggttatattttatgtttgaacatgccag

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 10
TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtg-aattttcttatcatctgaatgagaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcag---------------------------------
 | |||||  | || ||||||||||| || |||||||||||||| ||||||||||| ||  | || ||||||  |||||||| |  |   |   |  ||  ||  |||  || |  | |   | ||||        |||  | |  |  |    |                                  
CTTTGGGACATCAATATGGATTCAGGTCCTGTTGCAACTTTTCAAGTTCATGAATATTTGAGGCCCAAGgtgcgattttcttcttttgaaatctatcatctaaaggccaaataagcaacctatataattgatctaagtgtatcattttatccataatgatggtgggacttgtactctgatcttgatcag

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttcttatcatctgaatga----gaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcag-------
|| |||||  | || ||||| |||||||||||| |||| || |||||||||||||| ||| | ||||||||||  || ||| || || |||         |   || | |     || ||    ||| |  || ||             |||||            
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctt-tcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211227826|gb|FL399539.1|FL399539
EST:     ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAG                         CTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGC
genomic: ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttc ... tcttttgcagCTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGC
EST: gi|71772341|gb|DR970277.1|DR970277
EST:     ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAG                         CTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGC
genomic: ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttc ... tcttttgcagCTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGC