1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAGTGCAAGGGTTGCAGCTGCAAGAATACGTGGGGAAGCTATGAATGCAGCTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagctgacctgcatttttactagccatctaattctgtctcttcgtattttccttgcaaacacctttttcagtgacgagaattacaaaattctctc...
species | Zea mays |
transcript | GRMZM2G067546_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|74242229|gb|DT650143.1|DT650143
genomic: CAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGEST: gi|6828165|gb|AW331808.1|AW331808
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTG
EST: AATATGCTATACATGAGAGAGCATGAC-CTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|67015635|gb|CO444384.1|CO444384
genomic: AATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTCGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|6227124|gb|AW155653.1|AW155653
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|148962555|gb|EE013431.2|EE013431
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: GTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|60396640|gb|DN229508.1|DN229508
genomic: GTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|33100298|gb|CF060258.1|CF060258
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA ACAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|30032111|gb|CB833962.1|CB833962
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: GATGACAATATGCTATACATGAGAGAGCATGACNCTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|60401526|gb|DN234333.1|DN234333
genomic: GATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|148966624|gb|EE017666.2|EE017666
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|67019769|gb|CO448518.1|CO448518
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTCGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|211348715|gb|FL063226.1|FL063226
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|149099685|gb|EE185734.2|EE185734
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTEST: gi|29544790|gb|CB605398.1|CB605398
genomic: CTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
EST: GATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCA GCAAAGAGGGAACTGCCGCTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
genomic: GATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagct ... tgatgtgcagGCAAAGAGGGAACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGCAAGGGTTGCAGCTGCAAGAATACGTGGGGAAGCTATGAATGCAGCTGTGGTGATGACAATATGCTATACATGAGAGAGCATGACACTTGCATCAgtgagtagctgacctgcatttttactagccatctaattctgtctcttcgtattttccttgcaaacacctttttcagtgacgagaattacaaaattctctc
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