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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTCATATTGGGCCAGAGCCTACAACGGACAGGTTTGTTGTCATCACTgtaagttctgttcgactcctatgtctctatcaatcacacttgactccattcagtacgtatctttcccacgcatcctctcattcctacaacacctgctttttgccgccgcag

Basic information

species Zea mays
transcript GRMZM2G065012_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065012_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 10
GCGCTCATATTGGGCCAGAGCCTACAACGGACAGGTTTGTTGTCATCACTgtaagttctgttcgactcctatgtctctatcaatcacacttgactccattcagt---acgtatctt--tcccacgcatcctctcattcctacaacacctgctttttgccgccgcag
| ||||||||||| |||||||||||||| ||||| |||||||| || |||||| ||||| |  |      |||| || ||        | | |||    |  ||   || || | |    ||||  ||| || | | || |  | || | | | |  |  | ||||
GTGCTCATATTGGTCCAGAGCCTACAACTGACAGATTTGTTGTTATTACTgtaggttctatatggag---atgtgtcaatttgctttgcctaacttttgtttgttctacctaacatatctccactgatcttcacttcccaatgatacat-cctctcactactgcag

upper sequence: GRMZM2G065012_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 10
GCGCTCATATTGGGCCAGAGCCTACAACGGACAGGTTTGTTGTCATCACTgtaagttctgttcgact---cctatgtctctatcaatcacacttgactccattcagtacgtatctttcccacgcatcctctcattcctacaacacctgctttttgccgccgcag
| ||||||||||| |||||||| ||||| || |||||||||||  |||  ||| || |      | |   | ||| |  |||  |||  ||  | |     |     |||  |||||   | |  |  | | | |  || |     |   |||           
GAGCTCATATTGGACCAGAGCCAACAACTGATAGGTTTGTTGTTGTCATGgtatgtaccaaaatatttaacttatattactactaatatcatatcagagtgtc----acgagtcttta--agggttttttttaatattaaagt-tgtatatttaatt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50323441|gb|CO518567.1|CO518567
EST:     GCGCTCATATTGGGCCAGAGCCTACAACGGACAGGTTTGTTGTCATCACT                         TCTGGACCAGACGAAAGATGCATTCCTGGAAACACCATCGCCGTCCAAGCT
genomic: GCGCTCATATTGGGCCAGAGCCTACAACGGACAGGTTTGTTGTCATCACTgtaagttctg ... gccgccgcagTCTGGACCAGACGAAAGATGCATTCCTGGAAACACCATCGCCGTCCAAGCT
EST: gi|78124010|gb|DV542394.1|DV542394
EST:     GCGCTCATATTGGGCCAGAGCCTACAACGGACAGGTTTGTTGTCATCACT                         TCTGGACCAGACAAAAGATGCATTCCTGGAAACACCATCGCCGTCCAAGCT
genomic: GCGCTCATATTGGGCCAGAGCCTACAACGGACAGGTTTGTTGTCATCACTgtaagttctg ... gccgccgcagTCTGGACCAGACGAAAGATGCATTCCTGGAAACACCATCGCCGTCCAAGCT