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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctctcttatctacttgcctcacaaacagacaatcctatgtgtgtgtagtcgattcaacttacctttgtggcag

Basic information

species Zea mays
transcript GRMZM2G064302_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g04510.2 (Oryza sativa), 5'ss of exon 8
GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgta-tgttctctcttatct--acttgcctcacaaacagacaatcc-------tatgtgtgtgtagtcgattcaacttacc--tttgtggcag-----------------
||||||||||| ||||| ||||| |||||||| || ||||  |||||||||||||| || || ||| |   || | || |||  | ||  |||| ||    |  |||        | | | || ||  ||  |   | | | |  | | |                      
GAAAACAAAGAGGGCCTCGAACTGTTGAAGGCCGCAATAGCTAAGGCTGGCTACACAGGCAAAgtaattcccttttttctcttaatttagctcataattcaagcatctctttgattgtatttgcgtgatcattatgattcatcaatatctattgatttcgtttatatggcag

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G32960.1 (Glycine max), 5'ss of exon 10
GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctctcttatctacttgcctcacaaacagacaatcctatgtgtgtgtagtcgattcaacttacctttgtggcag
|||||||||||||| ||||||||  ||||| | ||||| |  || ||||| ||||||||||||||    |||   || ||||||         ||   |  ||| |||     | | |  ||||  | || |  || |  |||
GAAAACAAAGAAGGTCTTGAACTTCTGAAGACTGCCATTGCTAAAGCTGGTTACACTGGAAAGgttgaatct---ttgtctactgaatct---aatttagtatcttata-acatatggctgatt--agtttctattcttacag

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv16s0022g01770.t01 (Vitis vinifera), 5'ss of exon 10
GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctctcttatct--------acttgcctcacaaacagacaatcctatgtgtgtg-------tagtcgattcaacttacctttgtggcag-------------
|| ||||| ||||||||||||||| ||||| |||| || | ||| ||||| || ||||||||||||  ||||||| | | |        ||||   |  |  |      || |||| ||  ||       |  | | ||  || | |  |  |    |             
GAGAACAAGGAAGGCCTTGAACTACTGAAGACAGCTATTGCAAAAGCTGGATATACTGGAAAGgtaacttctctcatctttgaaatctaacttatatttcttagcacttattctatttgcatggttattatttttggttttacattcactgattattgacttttcttgcag

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ14601 (Selaginella moellendorffii), 5'ss of exon 8
GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctctcttatctacttgcctcacaaacagacaatcctatgtgtgtgtagtcgattcaacttacctttgtggcag
||||| |||||||| || ||||| |||||| | || || || |||||||||||||| |||||||||    |    || |   |||     ||||  | | | |   ||   |    ||                         
GAAAATAAAGAAGGTCTGGAACTGTTGAAGACTGCTATTGAGAAGGCTGGCTACACCGGAAAGgtagaaacaagatttttctctt----tacaattacaaagtggaattgattctcag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355773|gb|CD440130.1|CD440130
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|148946585|gb|EC890118.2|EC890118
EST:     CCTTGAACTATTGAAAGCAGCCATAGAAAAGGCTGGCTACACTGGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGGTCTTCGGTGAAAAAGA
genomic: CCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGG-AAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGA
EST: gi|67022470|gb|CO451219.1|CO451219
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|61117624|gb|DN558585.1|DN558585
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67024719|gb|CO453468.1|CO453468
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67017386|gb|CO446135.1|CO446135
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67013116|gb|CO441865.1|CO441865
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGNAAG                         GTGGTCATTGGAATGGNATGT-GCTGCTTCTGAGTTCTT
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGG-ATGTTGCTGCTTCTGAGTTCTT
EST: gi|31349718|gb|CD434075.1|CD434075
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGTTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|32920851|gb|CF025663.1|CF025663
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|60350146|gb|DN217119.1|DN217119
EST:     AGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: AGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67013379|gb|CO442128.1|CO442128
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67012265|gb|CO441014.1|CO441014
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|84980220|gb|DW530569.1|DW530569
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67024944|gb|CO453693.1|CO453693
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67014563|gb|CO443312.1|CO443312
EST:     AGAAAA-GCTGGCTACACTGNGAAA-                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGA
genomic: AGAAAAGGCTGGCTACACTG-GAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGA
EST: gi|60359624|gb|DN226597.1|DN226597
EST:     GCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|148986420|gb|EE030161.2|EE030161
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACCCTGGAAAG                         GTGGTCCAT-GGAAATGGATGTTG
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTC-ATTGGAA-TGGATGTTG
EST: gi|87152414|gb|DY397203.1|DY397203
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|32907047|gb|CF011860.1|CF011860
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGTATAAAGA
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTG-AGAAAGA
EST: gi|19770130|gb|BQ034851.1|BQ034851
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67018586|gb|CO447335.1|CO447335
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67016127|gb|CO444876.1|CO444876
EST:     CTTGAACTATTGAAGGGCAGCCATAGAAAAG-CTGGCTACACTGGNANAG                         GTGGTCATTGGAATGGATGTTGCTGCTCCTGAGTCCTTC
genomic: CTTGAACTATTGAAGG-CAGCCATAGAAAAGGCTGGCTACACTGGAA-AGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTC
EST: gi|9028626|gb|BE238666.1|BE238666
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67018888|gb|CO447637.1|CO447637
EST:     GCCTTGACCTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67024424|gb|CO453173.1|CO453173
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31362399|gb|CD446756.1|CD446756
EST:     GCCTTGAACTATTGAAAGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTC
EST: gi|31355712|gb|CD440069.1|CD440069
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31353289|gb|CD437646.1|CD437646
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGGAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCG
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCG
EST: gi|67016019|gb|CO444768.1|CO444768
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|32940038|gb|CF044857.1|CF044857
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|18963407|gb|BM660418.1|BM660418
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTG
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTG
EST: gi|32910676|gb|CF015488.1|CF015488
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67016246|gb|CO444995.1|CO444995
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67015460|gb|CO444209.1|CO444209
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31357822|gb|CD442179.1|CD442179
EST:     GAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|56382692|gb|CV985361.1|CV985361
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31353228|gb|CD437585.1|CD437585
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67026148|gb|CO454897.1|CO454897
EST:     GNCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTG-CTACACTGGNAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCCGTGAGAAA
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAA
EST: gi|67015581|gb|CO444330.1|CO444330
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAA-GCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67010878|gb|CO439627.1|CO439627
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|19822768|gb|BQ048792.1|BQ048792
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|32846178|gb|CD985859.1|CD985859
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31356461|gb|CD440818.1|CD440818
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|61117627|gb|DN558588.1|DN558588
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|149010075|gb|EE041882.2|EE041882
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGC
EST: gi|33102962|gb|CF062922.1|CF062922
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|60346155|gb|DN213128.1|DN213128
EST:     ACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: ACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67012612|gb|CO441361.1|CO441361
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67021410|gb|CO450159.1|CO450159
EST:     AAAGGTTGGCTACACTGNGAAA-                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGA
genomic: AAAGGCTGGCTACACTG-GAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGA
EST: gi|32863251|gb|CF002933.1|CF002933
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31364479|gb|CD448834.1|CD448834
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67021068|gb|CO449817.1|CO449817
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|61117628|gb|DN558589.1|DN558589
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|24768145|gb|CA403274.1|CA403274
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31355823|gb|CD440180.1|CD440180
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|32848724|gb|CD988405.1|CD988405
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCCTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67024837|gb|CO453586.1|CO453586
EST:     GCCTTGAACTATTGTAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67014200|gb|CO442949.1|CO442949
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67016423|gb|CO445172.1|CO445172
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAA-GCTGGCTACACTGGAAA-                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67013081|gb|CO441830.1|CO441830
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67022662|gb|CO451411.1|CO451411
EST:     GCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31351789|gb|CD436146.1|CD436146
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|61117626|gb|DN558587.1|DN558587
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|33100707|gb|CF060667.1|CF060667
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAAAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|32919805|gb|CF024617.1|CF024617
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|31359190|gb|CD443547.1|CD443547
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAATTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|22489824|gb|BU049747.1|BU049747
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACNCTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|78079386|gb|DV507798.1|DV507798
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGGATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|6696011|gb|AW289119.1|AW289119
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67016450|gb|CO445199.1|CO445199
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67015291|gb|CO444040.1|CO444040
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
EST: gi|67035313|gb|CO463846.1|CO463846
EST:     GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAG                         GTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC
genomic: GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctc ... tttgtggcagGTGGTCATTGGAATGGATGTTGCTGCTTCTGAGTTCTTCGGTGAGAAAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGCTACACTGGAAAGgtatgttctctcttatctacttgcctcacaaacagacaatcctatgtgtgtgtagtcgattcaacttacctttgtggcag

- - - - - - - - - - - - TTGAAG