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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagatatatgcttcaatttttaatgcaattactggaggtcgcatcacttgaattttgtgaagttaaagttgtttacagattttagaattaatgattaatattctttcatttgttgtttgaag

Basic information

species Zea mays
transcript GRMZM2G063909_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 11
GCTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgtt-cagatatatgcttcaatttttaatgcaattactggaggtcgcatcacttgaatt-ttgtgaagttaaagttgtttacagattttagaattaatgattaatattctttcatttgttgtttgaag
| | ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |  ||  || |  || | |||| |    || | ||   ||   | | ||   |   ||  |   |||   | ||| | | ||     | | | |                             
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagctttttttaccaatgcatccaaca-tctttact----ttccaggcaatcctgtaaattttgtaactgcaatagtaaccctattttctggttc----actgaag-----------------------------

upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 11
GCTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagatatatgcttcaatttttaatgcaattactggaggtcgcatcacttgaattttgtgaagttaaagttgtttacagattttagaattaatgattaatattctttcatttgttgtttgaag
| | ||||||||||| |||||||| |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||  ||| ||  || |  ||  |||   | | |   |     ||   |    |  | |    |     ||| |  |||| | | || |   |                                   
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagctttttatca-attcattcaccatctttacttaccag-gcaatctgtaaaaattttcaactgcaatagcaataatgccgttttctggttctctgaag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60354991|gb|DN221964.1|DN221964
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGATGGGAAATCAATAGAAGCTGATGATTCTCTGGATTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttgtttgaagAATTTTCAAGGATGGGAAATCAATAGAAGCTGATGATTCTCTGGATTATGC
EST: gi|60345083|gb|DN212056.1|DN212056
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGATGGGAAATCAATAGAAGCTGATGATTCTCTGGATTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttgtttgaagAATTTTCAAGGATGGGAAATCAATAGAAGCTGATGATTCTCTGGATTATGC
EST: gi|78088374|gb|DV516767.1|DV516767
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGATGGGAAATCAATAGAAGCTGATGATTCTCTGGATTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttgtttgaagAATTTTCAAGGATGGGAAATCAATAGAAGCTGATGATTCTCTGGATTATGC