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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtcaatggattatgggcaaatggatttaagagtggttctgcgtgtcaacttccataggtttttatattcaatttacccccctcaaattcttgatgcgcag

Basic information

species Zea mays
transcript GRMZM2G061620_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061620_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os09g24200.1 (Oryza sativa), 5'ss of exon 10
---GATGCTGGATCAGATGGCAGATGCAA---CTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtcaatggattatgggcaaatggat-ttaagagtggttctgcgtgtcaacttccataggtttttatattcaatttacccccctcaaattcttgatg-cgcag------
     |||| || ||| |  |||| ||||   |  ||||||| ||||| |||||||||||||||||||| ||||||||||| |||| |   ||   |         ||  |  |  | ||| | | | |   |||  | |   |||  | | ||  | ||   | | | || |||  |  | ||       
GAATTTGCTAGACCAGTTTCCAGAGGCAATGCCACAGACCATAGCAGTTACTCCAGAGGAGAATGAAGCCATACTTCGTgtgagtcgaaaaatcccgaattcccctatgctctgcttagttgt-catcttg-cttttagaatatttgctttacacataactagcataacatcctttctttcacatcctaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396214|gb|DN229083.1|DN229083
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60396214|gb|DN229083.1|DN229083
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60396214|gb|DN229083.1|DN229083
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|76280697|gb|DV020265.1|DV020265
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|76280697|gb|DV020265.1|DV020265
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|76280697|gb|DV020265.1|DV020265
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60339280|gb|DN206253.1|DN206253
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60339280|gb|DN206253.1|DN206253
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60339280|gb|DN206253.1|DN206253
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|18173700|gb|BM349088.1|BM349088
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|18173700|gb|BM349088.1|BM349088
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|18173700|gb|BM349088.1|BM349088
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|33092724|gb|CF052718.1|CF052718
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|33092724|gb|CF052718.1|CF052718
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|33092724|gb|CF052718.1|CF052718
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|32944591|gb|CF049410.1|CF049410
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|32944591|gb|CF049410.1|CF049410
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|32944591|gb|CF049410.1|CF049410
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60355834|gb|DN222807.1|DN222807
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60355834|gb|DN222807.1|DN222807
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|60355834|gb|DN222807.1|DN222807
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211501745|gb|FL041143.1|FL041143
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211501745|gb|FL041143.1|FL041143
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211501745|gb|FL041143.1|FL041143
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|33104092|gb|CF064052.1|CF064052
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         CTTGAAGGGATGGGCTTTGACCGGGCACTCGTCCTGGAAGTGTTCTTCGCC
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTCGTCCTGGAAGTGTTCTTCGCC
EST: gi|76288771|gb|DV028339.1|DV028339
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|76288771|gb|DV028339.1|DV028339
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|76288771|gb|DV028339.1|DV028339
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211179390|gb|FL472344.1|FL472344
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211179390|gb|FL472344.1|FL472344
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211179390|gb|FL472344.1|FL472344
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|101401580|gb|EB822466.1|EB822466
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAAGGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|101401580|gb|EB822466.1|EB822466
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAAGGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|101401580|gb|EB822466.1|EB822466
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAAGGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|4804466|gb|AI665336.2|AI665336
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|4804466|gb|AI665336.2|AI665336
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|4804466|gb|AI665336.2|AI665336
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|4966941|gb|AI691754.1|AI691754
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|4966941|gb|AI691754.1|AI691754
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|4966941|gb|AI691754.1|AI691754
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211167569|gb|FL481155.1|FL481155
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211167569|gb|FL481155.1|FL481155
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211167569|gb|FL481155.1|FL481155
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|32850730|gb|CD990411.1|CD990411
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|32850730|gb|CD990411.1|CD990411
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|32850730|gb|CD990411.1|CD990411
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|6431881|gb|AW172085.1|AW172085
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|6431881|gb|AW172085.1|AW172085
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|6431881|gb|AW172085.1|AW172085
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211460054|gb|FL445989.1|FL445989
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211460054|gb|FL445989.1|FL445989
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211460054|gb|FL445989.1|FL445989
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211460055|gb|FL445990.1|FL445990
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211460055|gb|FL445990.1|FL445990
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211460055|gb|FL445990.1|FL445990
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|16926213|gb|BM079281.1|BM079281
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|16926213|gb|BM079281.1|BM079281
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|16926213|gb|BM079281.1|BM079281
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|16927288|gb|BM080357.1|BM080357
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|16927288|gb|BM080357.1|BM080357
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|16927288|gb|BM080357.1|BM080357
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|78078954|gb|DV507366.1|DV507366
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|78078954|gb|DV507366.1|DV507366
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|78078954|gb|DV507366.1|DV507366
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|88748485|gb|DY532626.1|DY532626
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|88748485|gb|DY532626.1|DY532626
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|88748485|gb|DY532626.1|DY532626
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211090633|gb|FK965684.1|FK965684
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211090633|gb|FK965684.1|FK965684
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211090633|gb|FK965684.1|FK965684
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|78073733|gb|DV502167.1|DV502167
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAAGGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|78073733|gb|DV502167.1|DV502167
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAAGGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|78073733|gb|DV502167.1|DV502167
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAAGGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|33103634|gb|CF063594.1|CF063594
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|33103634|gb|CF063594.1|CF063594
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|33103634|gb|CF063594.1|CF063594
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211510600|gb|FL470556.1|FL470556
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211510600|gb|FL470556.1|FL470556
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-
EST: gi|211510600|gb|FL470556.1|FL470556
EST:     TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC                         G
genomic: TGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcag-

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 15 (downstream exon)
Score: 4

GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtca ... tgatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTCGTCCTGGAAGTGTTCTTCGCCTGCAACAAGAACGAGCAGCTGGCCGCCAACTACCTCTTGGATCACATGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTCgtgtaagtcaatggattatgggcaaatggatttaagagtggttctgcgtgtcaacttccataggtttttatattcaatttacccccctcaaattcttgatgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC