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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTACTTGGAACGCTTCTGGCAGCATTAGTACCGGTGGTTGGTTTTAATGCAGTAATGACCTCTGAGCACTTCGCATCATTTCTGgtatctatataccctctccttgatttttctccattccgcagtacaatatcattgccagctcttgcaaatgttttgcttcttgaggctggacttccaaatt...

Basic information

species Zea mays
transcript GRMZM2G060611_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 10
GTTGTACTTGGAACGCTTCTGGCAGCATTAGTACCGGTGGTTGGTTTTAATGCAGTAATGACCTCTGAGCACTTCGCATCATTTCTGgtatctatataccctctccttgatttttctccattccgcagtacaatatcatt--gccagctcttgcaaatgttttgcttcttgaggctggacttcca---aatt-----------------------------------------------------------------------------
||| |||| ||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| || || |  |  | |        ||    | |   ||  ||| |  ||    ||| || |  |     |||||    | ||  |  |   |||   || |                                                                             
GTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGgtatatacattcattggcttatgcacaccttttcttccttgtggaattttcttcattcagatcatttacccactttgccctattagaataaataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcag

upper sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 10
GTTGTACTTGGAACGCTTCTGGCAGCATTAGTACCGGTGGTTGGTTTTAATGCAGTAATGACCTCTGAGCACTTCGCATCATTTCTGgtatctatataccctctccttgatttttctccattccgcagtacaatatcattgccagctcttgcaaatgttttgcttcttgaggctggacttccaaatt
|||||| | |||||  |  |||| || || || || |||||||| |||||||| |||||||| || ||||| || ||||||||||||||   |     ||   |  |||  |    |  |||   |   |  |||      | ||    ||     |  |    |  | |      || |     | 
GTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAATGCTGTAATGACATCAGAGCATTTTGCATCATTTCTGgtgagttcccccctagtttttggatgaagttaattttccttaaagataagggaccaagagtatgttttagcctaatattattattgcataccttttcttg

upper sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 10
GTTGTACTTGGAACGCTTCTGGCAGCATTAGTACCGGTGGTTGGTTTTAATGCAGTAATGACCTCTGAGCACTTCGCATCATTTCTGgtatctatataccctctccttgatttttctccattccgcagtacaatatcattgccagctcttgcaaatgttttgcttcttgaggctggacttccaaatt-
|||||| | |||||  |  |||| || || || || |||||||| |||||||| |||||||| || ||||| || ||||||||||||||   | |   || | |  |||| ||   |  |||   |  || || || | || |        ||  |        | ||     || ||  |     | 
GTTGTATTGGGAACATTGTTGGCTGCCTTGGTGCCTGTGGTTGGGTTTAATGCTGTAATGACATCAGAGCATTTTGCATCATTTCTGgtgagtttcccccttgtttttgaattaagttgatttttcctta-aagataagtgaccaagagcacattttagcctaatattattattgcacaccttttctt

upper sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 10
GTTGTACTTGGAACGCTTCTGGCAGCATTAGTACCGGTGGTTGGTTTTAATGCAGTAATGACCTCTGAGCACTTCGCATCATTTCTGgt-atctatataccctctccttgatttttctccattccgcagtacaatatcattgccagctcttgcaaatgttttgcttcttgaggctggacttccaaatt
|||||  | |||||  |  | ||||| || || || || |||||||| |||||||||||||| || || || || |||||||||||||| |  | | ||    |      ||| || |   ||| |  ||      | |||   | |  |||     |||||  |     ||  || |   |    ||
GTTGTGTTGGGAACATTGTTAGCAGCTTTGGTGCCTGTTGTTGGTTTCAATGCAGTAATGACATCAGAACATTTTGCATCATTTCTGgtgagttctgtagggaccatgatattgttatttgttctgttgtgtccatttatt-ttatccattggtttagttttcatcagaaagtgtgtatggcgttgtt