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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaagtataaaaacatatcgatatcatgtctaaaatcagtagtgatcttttgtgtctatatactggcctctatctaacgtgttgcttcattgctt...

Basic information

species Zea mays
transcript GRMZM2G058584_T01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89758985|gb|DY687956.1|DY687956
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|8516559|gb|BE123284.1|BE123284
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|21331772|gb|BQ487153.1|BQ487153
EST:     GCAATCTCATTATTGGCATGGGGAACTGCATCGTGCCCAAAG                         GCTGAGAAGATTTTTTGACCTGGTTACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|23357617|gb|BU645266.1|BU645266
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|38688105|gb|CK145136.1|CK145136
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|71432207|gb|DR813257.1|DR813257
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|76012899|gb|DT940069.1|DT940069
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|211215840|gb|FL096753.1|FL096753
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|32840983|gb|CD980664.1|CD980664
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG                         CCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
EST: gi|38687960|gb|CK144991.1|CK144991
EST:     GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG                         GCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG
genomic: GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAGgtatttgaag ... gtccatacagGCTGAGAAGATTTTTGGACCTGGTAACCAGTATGTAACAGCTGCCAAAATG