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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgtgagcttctggtattttaattcgacgtatgaagctgttgaggttcatgaacatccttctaatgtcccacctctgcatgtcttcgtaaaccatagtgaat...

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 11
GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgtgagcttctggtattttaattcgacgtatgaagctgttgaggttcatgaacatccttctaatgtcccacctctgcat---gtcttcgtaaaccatagtgaat-----
 ||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || ||  |  | |||||||| |||||||| ||||||||||||   ||||| |   || |||      |   |||| || |   |  |  || ||| | | |   |     |   |||   ||  |  ||||   |    | |     
AGAATTGTTTGCACAAACAAAATACAAGGAAGCAGCTGAGTTGGCTGCAGAATCTCCTCAAGGTCTTCTCCGAACTCCTGAGACTGTTGCAAAATTTCAGgtgcatttctgct--cttgatt------acagagctattaacacttctttacctccattttacagctatttttcacattctgtactgttaaaagcttaaaattatgtg

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 11
GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgtgagcttctggtattttaattcgacgtatgaagctgttgaggttcatgaacatccttctaatgtcccacctctgcat---gtcttcgtaaaccatagtgaat-----
 ||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || ||  |  | |||||||| |||||||| ||||||||||||   ||||| |   || |||      |   |||| || |   |  |  || ||| | | |   |     |   |||   ||  |  ||||   |    | |     
AGAATTGTTTGCACAAACAAAATACAAGGAAGCAGCTGAGTTGGCTGCAGAATCTCCTCAAGGTCTTCTCCGAACTCCTGATACTGTTGCAAAATTTCAGgtgcatttctgct--cttgatt------acagagctattaacacttcttcacctccattttacagctatttttcacattctgtactgttaaaagcttaaaattatgtg

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 11
GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgtga-gcttctggtattttaattcgacgtatgaagctgttgaggtt-catgaacatcctt---ctaatgtcccacctctgcatgtcttcgtaaaccatagtgaat--------------------------------------------------------------------------------------
 ||||||||||| |||||||| || || ||||||||||| || ||||| ||||||||||| ||  || |  | || ||||| || ||||| |||||||||||   |  | |   ||         |  |||   | |  ||   || ||| ||||   ||   |||      || || ||| ||| ||     |  |  |  ||                                                                                       
TGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAACTTGCTGCTGAGTCTCCGCAAGGAATCCTTCGCACACCTGATACAGTTGCCAAATTTCAGgttttgtatataagatacagccatcaaatattttgttcgtgctctttcatcaacaaatttaacctagacaatcatctttgcttgttttgagggataaaggataaaaggaatttgaactgtttaggtttgttctttttcttggtcaattaggctatcatggttaaagtgtgtcaatctgttttatgtggcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 11
GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgt--------gagct-------tctggtattttaattcgacgtatgaagctgttgaggttcatgaacatccttctaatgtcccacctctgcatgtcttc--gtaa-accatagtgaat--------------------------------------------------
 ||||||||||| ||||||||||| |||||||| || ||||| || || || ||||| || ||  || |  | |||||||| || ||||| |||||||||||         || |       ||||| | |||  |    | | |  ||||  |    ||||   | || | | |  ||        |||  || |||   || |   | |  ||  |                                                  
TGAACTGTTTGCCCAAACAAAATATAAGGAAGCTGCAGAGCTTGCAGCTGAATCTCCACAAGGAATCCTTCGAACTCCTGACACAGTTGCCAAATTTCAGgtttcttgataagatgttgctatctgggaattttctcttgcttttttagctacttca-ttcacagagattcattttctggttgtttactgtttgcctttaggtgatgtccttttgtttggtcaattagttataatgtttaaaatgccattatctgctttatgtggcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 11
GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgtgagcttctggtattttaattcgacgtatgaagctgttgaggttcatgaacatccttcta-atgtcccacctctgca--tgtcttcgtaaaccatagtgaat-------------------------------------------------------------------------------------------------
 ||||||||||| ||||| || || || |||||||||||||| ||||| |||||||| || ||  || |  | || ||||| || ||||| |||||||||||       | |||| | |  |  |   || ||    || ||  |  ||  | | | || | |  |   ||||   ||    |||| ||  |  ||  || ||                                                                                                 
TGAACTGTTTGCCCAAACCAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGCACACCTGATACAGTTGCCAAATTTCAGgt------tttgtatataagatatagccatcaaatattttag--ttgtgctctttcatcaacaaatttaacctagacaatcatctttgtggagaatgatggataaaggataaaagagtttgaaatgtttttaggtttgttctttttcttggtcaattaggctgtcatgtttaaagtgtcacgatctgttttatgtggcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgtg-agcttctggtattttaattcgacgtat-------gaagctgttgaggttcatgaacatccttctaatgtcccacctctgcatgtcttcgtaaaccatagtgaat
 ||||||||||| || ||||| || |||||||| || ||||| |||||||| ||||| ||||| ||| || | |||||||| |||||||| |||||||||||  | | | ||||    |  ||  | ||||         | |||   |   |||    | ||||| | | ||   || | ||    |||   | ||    ||     
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatttggttggcttgttt-atgtattttcttaatatctgacaattctcagatgcttccttatgaagttgaacttatgt---tctcatttaatttcagg----