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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATCTTAGATGGAGATCGCTGAACGGTCCGTTCGTTTCAGTCTGGCTCGGCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagtctctcgccgttccgtgccccgcggttccactgcgctccatatagctttgaccctttcttgtttgttgccatgcag

Basic information

species Zea mays
transcript GRMZM2G057475_T03
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14244524|gb|BG840145.2|BG840145
EST:     TGCCATGGCAGCACCAAAAGCAGAG                         TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
genomic: TGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: gi|78089440|gb|DV517814.1|DV517814
EST:     TGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAG                         TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
genomic: TGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: gi|71309966|gb|DR791266.1|DR791266
EST:     CCATGGCAGCACCAAAAGCAGAG                         TTTGCGGAT-GCTACTTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTG
genomic: CCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTAC-TTGGATGCTGCTATAATCAAGGACTGCCCGCGGTG
EST: gi|71441279|gb|DR822329.1|DR822329
EST:     CTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAG                         TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
genomic: CTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: gi|14206828|gb|BG840506.1|BG840506
EST:     GCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAG                         TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
genomic: GCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: gi|67017796|gb|CO446545.1|CO446545
EST:     GATCGCTGAACGGTCCGTTCGTTTCAGTCTGGCTCGGCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAG
genomic: GCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGG
EST: gi|78023377|gb|DV491764.1|DV491764
EST:     GATGCCATGGCAGCACCAAAAGCAGAG                         TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
genomic: GATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATCTTAGATGGAGATCGCTGAACGGTCCGTTCGTTTCAGTCTGGCTCGGCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagtctctcgccgttccgtgccccgcggttccactgcgctccatatagctttgaccctttcttgtttgttgccatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG