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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGGCCTCTGATACATGGGCAGTTGGTGTAACTTTATATTGTATGGTTTCTGGGCATTATCCATTTCTTGGGGATACATTGCAGGAAACTTATGATAAGgtgcaaaaaaaaaaagtttctgtccttccctttttcttcttaattactctgcgtaaagctcacttgagtggttgttacacaatag

Basic information

species Zea mays
transcript GRMZM2G057084_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057084_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 5'ss of exon 10
TCGGGCCTCTGATACATGGGCAGTTGGTGTAACTTTATATTGTATGGTTTCTGGGCATTATCCATTTCTTGGGGATACATTGCAGGAAACTTATGATAAGgtgcaaaaaaaaaaagtttctgtccttccctttttcttcttaattactctgcgtaaagctcacttgagtggttgttacacaatag
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TCGGGCAGCTGATACATGGGCAGTTGGCGTTACTCTGTATTGTATGATTACTGGTCACTATCCATTTCTAGGAGATACCTTACAGGAAACTTATGATAAGgtacaaaaata--------ccccccttccatttccttttgctttaccttttcattcaactcattcaagacattgctgtggaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211432932|gb|FL230799.1|FL230799
EST:     CTGGGCATTATCCATTTCTTGGGGATACATTGCAGGAAACTTATGATAAG                         ATTGCCAATGATCCTGTGCAAATACCTGGAGACATGAACCCCCAACTTGCT
genomic: CTGGGCATTATCCATTTCTTGGGGATACATTGCAGGAAACTTATGATAAGgtgcaaaaaa ... tacacaatagATTGCCAATGATCCTGTGCAAATACCTGGAGACATGAACCCCCAACTTGCT