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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGGCCAGATATGCGGTTACCAATCTTATACACCTTATCATGGCCAGATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatcttcaaactcctgtgctacttgtgcagtacaattgatgcttttatttggaaatggccttcaagaattcaagtcttatttttcttgattaca...

Basic information

species Zea mays
transcript GRMZM2G056975_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g01710.2 (Oryza sativa), 5'ss of exon 9
TGGGATGGCCAGATATGCGGTTACCAATCTTATACACCTTATCATGGCCAGATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatcttca---aactcctgtgctacttgtgcagtacaattgatgcttttatttggaaatggccttcaagaattcaagtcttatttttcttgattaca
|||||||||||||||||||| ||||||||||||||||| | || |||||||| |||||||||||||| |||||||||||||| || || ||||||||||||||     |||||    || | ||||||||||| |||| ||| | ||||  |||| || |  |||| |||  |||||||  ||  || || || || ||    
TGGGATGGCCAGATATGCGGATACCAATCTTATACACCATGTCTTGGCCAGACAGAATCTATTGCTCAGAGGTCACCTGGCCCCGACTAGATCTTTGCAAgtacaggctcttcccttaaatgctgtgctacttttgcattaccactgataattttgttcgagaatgacctcaaagaattttagctttcttattgtt-atcg--

upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA05G02190.1 (Glycine max), 5'ss of exon 10
TGGGATGGCCAGATATGCGGTTACCAATCTTATACACCTTATCATGGCCAGATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatcttcaaactcctgtgctacttgtg-cagtacaattgatgcttttatttggaaatggccttcaagaatt----caagtcttatttttcttga--ttaca--------------------------------------------------------------------------------------
|||| ||||| |||||||| || |||||| | || || ||||||||||| || || || ||||| ||||| ||||| ||||| || || ||||||||||||||    |   |    || | |   ||||  |  ||   | ||  |   || |||||  |        | |||||      ||  ||   ||  | | ||  || ||                                                                                      
TGGGGTGGCCTGATATGCGTTTGCCAATCCTCTATACATTATCATGGCCTGACAGGATTTATTGTTCTGAAGTCACTTGGCCACGCCTTGATCTTTGCAAgtactgtaatctttccctgcagc-ttactaatttcaactctatcaaa--ttctattttcagtccattctaaagaaaatagacagatccagttgatatagagttttcaaatttggaagcatttatgttaaatgaaaattttattcaacccaatttgaattattgatggttcttatttgaaatgtggttatgcag

upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv17s0000g08390.t01 (Vitis vinifera), 5'ss of exon 10
TGGGATGGCCAGATATGCGGTTACCAATCTTATACACCTTATCATGGCCAGATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatcttcaaactcctg--tgctacttgtgcagtacaattgatgcttttatttggaaatggccttcaagaattcaagtcttatttttcttgattaca--
|||| ||||| |||||||| || |||||| | || || ||||| |||||||| ||||| || ||||||||| | || ||||| || || |||||||||||||  |   |    | |||  |   ||  | |  ||   || || |  | |  | | ||   | |    |||  ||  |  |     |  || | ||   |    
TGGGGTGGCCTGATATGCGTTTGCCAATCCTCTATACTTTATCGTGGCCAGACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtactaagtagactgttaattgtcaatcatggtctaaaact--taccataacttcctattaaatttcttga--ttgataacaaagttccatgcccatgtg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16379495|gb|BI992983.1|BI992983
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|14244555|gb|BG840684.2|BG840684
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|31362671|gb|CD447028.1|CD447028
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCCCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAGAGCTCCAGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|67032629|gb|CO461378.1|CO461378
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCCCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAGAGCTCCAGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|84970217|gb|DW468567.1|DW468567
EST:     GATAGAATCTATTGTTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|18167286|gb|BM337125.1|BM337125
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAAATCTCCCGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|71445034|gb|DR826084.1|DR826084
EST:     GATAGAATCTATTGTTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|89252718|gb|DY624504.1|DY624504
EST:     GATAGAATCTATTGTTCTGAGGTCACCGGGCCTCGTCTGGATCTTTGCAA                         GTGGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|86474441|gb|DY240811.1|DY240811
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|12968309|gb|BG265255.1|BG265255
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTTAAATACCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT
EST: gi|211274635|gb|FL463120.1|FL463120
EST:     GATAGAATCTATTGCTCTGAGGTCACCTGGCCCCGTCTGGATCTTTGCAA                         GTTGGGTTCACTGACATTCAGAGCTCCAGACAACGTWAAATMCCCATCAAT
genomic: GATAGAATCTATTGCTCTGAGGTCACCTGGCCTCGTCTGGATCTTTGCAAgtatgacatc ... gttaatgcagGTTGGGTTCACTGACATTCAAAGCTCCCGACAACGTAAAATACCCATCAAT