1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTAAGAGGAGATGATAAAGACGATCCTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtgatgtgcattctgtattatagcacctccagttcctgggttcgatccccatcgaggacgaatttctggcttggttaaaaaaaatctcctcgc...
species | Zea mays |
transcript | GRMZM2G055520_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|211117417|gb|FL123104.1|FL123104
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|6445442|gb|AW179360.1|AW179360
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|5108209|gb|AI739922.1|AI739922
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|6342626|gb|AW165450.1|AW165450
genomic: CCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|78026209|gb|DV494596.1|DV494596
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|51592768|gb|CV071914.1|CV071914
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|12973657|gb|BG268590.1|BG268590
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTCCAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|6445422|gb|AW179490.1|AW179490
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|71432829|gb|DR813879.1|DR813879
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|76286686|gb|DV026254.1|DV026254
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGGEST: gi|101389744|gb|EB816806.1|EB816806
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTG CCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
genomic: CTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtg ... tttatttcagCCTCTTCCTACCAAGCTAGTTTTGCAGAAGAAAAAGGCAAAGGAGGGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGAGGAGATGATAAAGACGATCCTACAACATACCTTGTCACATTTGATAAGAAGGATGGTGCAAAATATTTGgtaattagtgatgtgcattctgtattatagcacctccagttcctgggttcgatccccatcgaggacgaatttctggcttggttaaaaaaaatctcctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaaa