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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCGCATCATACAACTCAGAAAACATAGCACAGCTCATTGCTGCCTCTGTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagatcgtcagcattattttatatgctagaagggacttataacttttttactatgacttgtcctaagcag

Basic information

species Zea mays
transcript GRMZM2G051138_T01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78079476|gb|DV507888.1|DV507888
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|6526840|gb|AW216109.1|AW216109
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACGCCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|91875851|gb|EB405808.1|EB405808
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|78122197|gb|DV540581.1|DV540581
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|6466789|gb|AW191449.1|AW191449
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG