1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCCATAGGGCTGCTTTTGTTCTGCCAACATTTGTAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtttgttagttactctattgatggtgtggttagtctttatgtccatgcattttgttctgccaacatttataagaagagaactggaaacatataccactccctttttttttgcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacag
species | Zea mays |
transcript | GRMZM2G047867_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTTTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|18177971|gb|BM379181.1|BM379181
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|5871424|gb|AW017895.1|AW017895
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|60345911|gb|DN212884.1|DN212884
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|5740451|gb|AI948141.1|AI948141
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|37385273|gb|CF629769.1|CF629769
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTAGTACCTCTGCTGAAAAC GAGAAACCGAAAGAATCGGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|88757916|gb|DY542057.1|DY542057
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|93014144|gb|EB639664.1|EB639664
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGGTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|60350962|gb|DN217935.1|DN217935
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|88757915|gb|DY542056.1|DY542056
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTTTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAEST: gi|71757236|gb|DR955173.1|DR955173
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCATAGGGCTGCTTTTGTTCTGCCAACATTTGTAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtttgttagttactctattgatggtgtggttagtctttatgtccatgcattttgttctgccaacatttataagaagagaactggaaacatataccactccctttttttttgcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacag
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG