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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttatttttgttagctctaaggacttgcaaccatgccctcagtatttgctgagatattcatgattccattag...

Basic information

species Zea mays
transcript GRMZM2G045259_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 10
TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttatttttgttagctctaaggacttgcaaccatgccctcagtatttgctgagatattc-atgattccattag
 || ||||| ||||| ||||| | ||||||  ||||||||||||| |||||||| |||||||||||   ||||||  ||||||| ||||||||||| ||||||||||| ||||   | |  |    |||   | | | | | || | || |      | | ||     | | |  | |   ||   | ||   ||   |  
CGACGAAGAGCCAAACTATGCAAAGTGCATTGCTCTTTTTGATGGCATTGTTGGTCCAAATCCAGATGGAAGACCATTAAACACCGATGGTGCCCAGAAGgtacattattccttcaaccattttaatctgcgtctgtatcatctgtcagaaaaaatgatcgtgtagg-aatctcagttccaattccctatttctcggatca

upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 10
TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttatttttgttagctctaaggacttgcaaccatgccctcagtatttgctgagatattcatgattccattag
||||||||||||||||||||| |  |  || || ||||| ||||| ||||| |||||||||||||| || || || ||||||||||| ||||| || ||||||| ||||| || | |    |      |||  |||| ||     ||   | ||  |  |   |  | | |      |       | || ||||  |   
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGATATCAGGCCAATAAACACTGAAGGTGCTCAGAAGgtac-ttaattctattattattttaaaatttgcttttattg--cttacatatttaaagtctgactgtgactgccctttttttgggttattattctgtag-

upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 10
TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttatttttgttagctctaaggacttgcaaccatgccctcagtatttgctgagatattcatgattccattag
||||||||||||||||||||| || |  || || ||||| ||||| ||||| |||||||||||||| || || || ||||||||||| ||||| || ||||||| ||||| || | |    |      |||  |||| ||     ||   | ||  |  |   |  | | |      |       | || ||||  |   
TGATGAAGAACCAAATTATGCAAGATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGATATCAGGCCAATAAACACTGAAGGTGCTCAGAAGgtac-ttaattctattattattttaaaatttgcttttattg--cttacatatttaaagtctgactgttactgccctttttttgggttattattctgtag-

upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttattt--ttgttagctctaaggacttgcaaccatgccctcagtatttgctgagatattcatgattccattag
||||||||||||||||||||| |  |  || || ||||| ||||| ||||| ||||||||||||||||| || || ||||||||||||||||| || ||||||| ||||| ||    | | | |  |    ||||  || |||   || |    ||| ||   || |    ||      ||        || ||||  |   
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtac-ttaatgct----aatattactttagaatttgctttttattgcttacatattgaaagtctgactgttgttgcccttgtttgggctattattctgtag-

upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 10
TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttatttttgttagctctaaggacttgcaaccatgccctcagtatttgctgagatattcatgattccattag
|||||| || ||  |||||||||  |   |||| ||||||||||| || || |||||||| |||||||| || || ||||| ||||| ||||| || |||||   ||  |  |||    | |||    | ||||   |||  || |   | ||     |         |   |||  |    | |   || |   |    
TGATGAGGAGCCTGATTATGCTAAATATGTCTCCCTTTTTGATGGAATAGTCGGCCCAAACCCAGACATTAGGCCAATAAATACTGAGGGTGCACAGAAGgtgatttggtgatcttctttatgaaacatatattgaggtttactatttag-ctccggtctgaatgtctaaagttttttcgtgtttgtctggtgtgaag--

upper sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 10
TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttatttttgttagctctaaggacttgcaacca--tgccctcagtatttgctgagatattcatgattccattag
|||||||||||| |||||||| |  |  ||||| || |||||||| ||||| || |||||||| || || || || ||||||||||||||||| || |||||||     |    | | ||||     ||  || |   ||   | | |    | ||       |||    |  || |  | |  ||||  |||         
TGATGAAGAACCTAATTATGCAAAATATATCTCCCTCTTTGATGGGATTGTGGGTCCAAATCCGGATATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacccatttatgtttatctgtctgtactgaatatgaatttcttttcacatttggctttggagtgcatctaacatgtatttacctatt-gtgaag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929439|gb|CF034251.1|CF034251
EST:     TTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAG                         CTAGTATATCAGGTTGGGCAGAAGAGAGGTCGCTTAATAGTGGACGAAAAT
genomic: TTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaat ... tatctgccagCTAGTATATCAGGTTGGGCAGAAGAGAGGTCGCTTAATAGTGGACGAAAAT
EST: gi|32928927|gb|CF033739.1|CF033739
EST:     TTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAG                         CTAGTATATCAGGTTGGGCAGAAGAGAGGTCGCTTAATAGTGGCCGAAAAT
genomic: TTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaat ... tatctgccagCTAGTATATCAGGTTGGGCAGAAGAGAGGTCGCTTAATAGTGGACGAAAAT