1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGATGATTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaattttatcttgtgaggttcaagaaatactcgtcacttttcatcttgccggccgtggcatgctgtttcacattgctatttttcgtattgcag
species | Zea mays |
transcript | GRMZM2G045241_T07 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|78081455|gb|DV509867.1|DV509867
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGNNNNNNNGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|211252583|gb|FL430692.1|FL430692
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAASCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|76908596|gb|DV163020.1|DV163020
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|211489896|gb|FL473954.1|FL473954
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|15080211|gb|BI388982.1|BI388982
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TCTCAGTCTGAAGCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|211489897|gb|FL473955.1|FL473955
genomic: TCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|78117446|gb|DV535833.1|DV535833
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGEST: gi|211260967|gb|FL474891.1|FL474891
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
EST: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAG ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
genomic: TTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaat ... cgtattgcagACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGATGATTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtgaattttatcttgtgaggttcaagaaatactcgtcacttttcatcttgccggccgtggcatgctgtttcacattgctatttttcgtattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC