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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCAAGACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgattccaggacaaaaatgtttcccattgtgtccctaaatattagtcctttttgaaagcttgattacatatgaaaaatgatgtcaattggccaca...

Basic information

species Zea mays
transcript GRMZM2G043350_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043350_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g35530.1 (Oryza sativa), 5'ss of exon 11
TGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCAAGACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgattccaggacaaaaatgtt-tcccattgtgtccctaaatattagtcctttttgaaagcttg--attacatatgaaaaatgatgtcaattggccaca
 ||||| |||||||||||||| ||||| || ||||||||| ||||||||| ||| || ||||| || || ||||| || || |||||||||||||| ||||||||| ||| || ||||| |   || || |||  |   ||||||||    ||| |||  | ||||||  || | |  |    |||  | |    |    |  
GGAGGCATGTGCTCATTCATTTTTTGATGAGTTACGAGAACCACATGCAAAACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgtaagttatttcaagacaataccattgtcgcatcata--cctaaatacatctccgtttgtagagcttgtaatcaaacttctgtaattttttactatcattat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101574|gb|EE187700.2|EE187700
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|32848647|gb|CD988328.1|CD988328
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|71434428|gb|DR815478.1|DR815478
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTTCCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|71759011|gb|DR956948.1|DR956948
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|5706281|gb|AI942057.1|AI942057
EST:     GACTCCCTAACGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|60346873|gb|DN213846.1|DN213846
EST:     GACTCCCTAACGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|60353976|gb|DN220949.1|DN220949
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|71446525|gb|DR827575.1|DR827575
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|78092424|gb|DV520798.1|DV520798
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|93015969|gb|EB641489.1|EB641489
EST:     ACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: ACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|60338451|gb|DN205424.1|DN205424
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|60401450|gb|DN234257.1|DN234257
EST:     GACTCCCTAACGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
EST: gi|60399024|gb|DN231840.1|DN231840
EST:     GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAA                         CTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT
genomic: GACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGGAAgtaagtgatt ... tcctttgcagCTAGCAAACGCACCACCGGAGCTTGTCAGCAGGCTATTACCAGAGCATGCT