1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgttttttatttcttctaaactacagccttgtgctgtcagatctcattttccctgggagtccagtcgttgtcttattctttagtaattctctgttcag
species | Zea mays |
transcript | GRMZM2G043198_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|149060160|gb|EE157128.2|EE157128
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|6056687|gb|AW091092.1|AW091092
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|32801932|gb|CD954168.1|CD954168
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCAGATAAACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAEST: gi|110221099|gb|EC902997.1|EC902997
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|32829371|gb|CD969049.1|CD969049
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: AAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|71431245|gb|DR812295.1|DR812295
genomic: AAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|148928998|gb|EC874173.2|EC874173
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|32788226|gb|CD940462.1|CD940462
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGGTGGATAGAGCTACTATTAEST: gi|76282095|gb|DV021663.1|DV021663
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|31349832|gb|CD434189.1|CD434189
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|50330846|gb|CO525972.1|CO525972
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: TGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|67038743|gb|CO464998.1|CO464998
genomic: TGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|5761992|gb|AI967040.1|AI967040
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: CCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|60396979|gb|DN229798.1|DN229798
genomic: CCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|463331|gb|T18298.1|T18298
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|71316610|gb|DR794980.1|DR794980
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|32801690|gb|CD953926.1|CD953926
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAEST: gi|5566803|gb|AI881669.1|AI881669
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: ACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|31349833|gb|CD434190.1|CD434190
genomic: ACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCCCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|14245208|gb|BG873790.1|BG873790
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: CCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|18177942|gb|BM379152.1|BM379152
genomic: CCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: CAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|6031329|gb|AW076186.1|AW076186
genomic: CAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|78086374|gb|DV514767.1|DV514767
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|78092118|gb|DV520492.1|DV520492
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGCCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|60340342|gb|DN207315.1|DN207315
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATTTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|15082843|gb|BI389527.1|BI389527
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: TGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|32802072|gb|CD954308.1|CD954308
genomic: TGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAEST: gi|211383123|gb|FL435718.1|FL435718
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|40336329|gb|CK370399.1|CK370399
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|71432758|gb|DR813808.1|DR813808
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|44900498|gb|CK827043.1|CK827043
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|148951825|gb|EC897588.2|EC897588
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATTATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATTTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|60340970|gb|DN207943.1|DN207943
genomic: GCCGCTGA-TATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|6828052|gb|AW331695.1|AW331695
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|5566870|gb|AI881781.1|AI881781
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCAEST: gi|37378649|gb|CF626026.1|CF626026
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgttttttatttcttctaaactacagccttgtgctgtcagatctcattttccctgggagtccagtcgttgtcttattctttagtaattctctgttcag
- GCTGAT
- - - - - - - - - AAGGAA